Packages with last news in 2020 from Debian Tracker.
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Last news years Medical: 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2003| gone | not main | h | h | Debian Tracker | F | R | short description | version in Debian | Debian maintainer |
|---|---|---|---|---|---|---|---|---|---|
| h | h | abacas | F | R | close gaps in genomic alignments from short reads | v1.3.1-9 | Debian Med Packaging Team | ||
| h | h | adun.app | F | R | Molecular Simulator for GNUstep (GUI) | v0.81-14 | Debian Med Packaging Team | ||
| h | h | aeskulap | F | R | medical image viewer and DICOM network client | v0.2.2-beta2+git20190406.ef77f01-3 | Debian Med Packaging Team | ||
| h | h | aghermann | F | R | Sleep-research experiment manager | v1.1.2-3 | Debian Med Packaging Team | ||
| h | h | alien-hunter | F | R | Interpolated Variable Order Motifs to identify horizontally acquired DNA | v1.7-8 | Debian Med Packaging Team | ||
| h | h | amap-align | F | R | Protein multiple alignment by sequence annealing | v2.2+git20080214.600fc29+dfsg-2 | Debian Med Packaging Team | ||
| h | h | amide | F | R | software for Medical Imaging | v1.0.5-15 | Debian Med Packaging Team | ||
| h | h | aragorn | F | R | tRNA and tmRNA detection in nucleotide sequences | v1.2.38-4 | Debian Med Packaging Team | ||
| h | h | arcp | F | R | (Archive and Package) URI parser and generator | v0.2.1-3 | Debian Med Packaging Team | ||
| h | h | artfastqgenerator | F | R | outputs artificial FASTQ files derived from a reference genome | v0.0.20150519-4 | Debian Med Packaging Team | ||
| h | h | art-nextgen-simulation-tools | F | R | simulation tools to generate synthetic next-generation sequencing reads | v20160605+dfsg-4 | Debian Med Packaging Team | ||
| h | h | atropos | F | R | NGS read trimming tool that is specific, sensitive, and speedy | v1.1.29+dfsg-1 | Debian Med Packaging Team | ||
| h | h | autodocksuite | F | R | v4.2.6-8 | Debian Med Packaging Team | |||
| gone | non-free | autodocktools | F | R | v1.5.7~rc1+cvs.20140424-1 | Debian Med Packaging Team | |||
| h | h | autodock-vina | F | R | docking of small molecules to proteins | v1.1.2-6 | Debian Med Packaging Team | ||
| h | h | baitfisher | F | R | software package for designing hybrid enrichment probes | v1.2.7+git20190123.241d060+dfsg-1 | Debian Med Packaging Team | ||
| h | h | barrnap | F | R | rapid ribosomal RNA prediction | v0.9+dfsg-2 | Debian Med Packaging Team | ||
| h | h | biococoa | F | R | v2.2.2-5 | Debian Med Packaging Team | |||
| h | h | bio-eagle | F | R | Haplotype phasing within a genotyped cohort or using a phased reference panel | v2.4.1-3 | Debian Med Packaging Team | ||
| h | h | bio-rainbow | F | R | clustering and assembling short reads for bioinformatics | v2.0.4+dfsg-2 | Debian Med Packaging Team | ||
| gone | h | h | biosig4c++ | F | R | v1.9.3-2 | NeuroDebian Team | ||
| h | h | biosquid | F | R | utilities for biological sequence analysis | v1.9g+cvs20050121-12 | Debian Med Packaging Team | ||
| h | h | biosyntax | F | R | Syntax Highlighting for Computational Biology (metapackage) | v1.0.0b-2 | Debian Med Packaging Team | ||
| h | h | bio-tradis | F | R | analyse the output from TraDIS analyses of genomic sequences | v1.4.5+dfsg2-1 | Debian Med Packaging Team | ||
| h | h | boxshade | F | R | Pretty-printing of multiple sequence alignments | v3.3.1-14 | Debian Med Packaging Team | ||
| h | h | bppsuite | F | R | Bio++ program suite | v2.4.1-3 | Debian Med Packaging Team | ||
| h | h | brig | F | R | BLAST Ring Image Generator | v0.95+dfsg-3 | Debian Med Packaging Team | ||
| gone | h | h | cain | F | R | simulations of chemical reactions | v1.10+dfsg-3 | Debian Med Packaging Team | |
| h | h | cassiopee | F | R | index and search tool in genomic sequences | v1.0.9-3 | Debian Med Packaging Team | ||
| gone | h | h | cfflib | F | R | Multi-modal connectome and metadata management and integration | v2.0.5-3 | Debian Med Packaging Team | |
| h | h | cgview | F | R | Circular Genome Viewer | v0.0.20100111-7 | Debian Med Packaging Team | ||
| h | h | chemtool | F | R | chemical structures drawing program | v1.6.14-6 | Debichem Team | ||
| h | h | chip-seq | F | R | tools performing common ChIP-Seq data analysis tasks | v1.5.5-3 | Debian Med Packaging Team | ||
| h | h | circos | F | R | plotter for visualizing data | v0.69.9+dfsg-2 | Debian Med Packaging Team | ||
| h | h | clustalo | F | R | General-purpose multiple sequence alignment program for proteins | v1.2.4-7 | Debian Med Packaging Team | ||
| h | h | clustalw | F | R | global multiple nucleotide or peptide sequence alignment | v2.1+lgpl-7 | Debian Med Packaging Team | ||
| h | h | clustalx | F | R | Multiple alignment of nucleic acid and protein sequences (graphical interface) | v2.1+lgpl-9 | Debian Med Packaging Team | ||
| non-free | h | h | cluster3 | F | R | Reimplementation of the Eisen-clustering software | v1.59+ds-3 | Debian Med Packaging Team | |
| h | h | concavity | F | R | predictor of protein ligand binding sites from structure and conservation | v0.1+dfsg.1-5 | Debian Med Packaging Team | ||
| h | h | ctn | F | R | Central Test Node, a DICOM implementation for medical imaging | v3.2.0~dfsg-7 | Debian Med Packaging Team | ||
| gone | h | h | cycle | F | R | calendar program for women | v0.3.1-14 | Debian Med Packaging Team | |
| h | h | daligner | F | R | local alignment discovery between long nucleotide sequencing reads | v1.0+git20200727.ed40ce5-3 | Debian Med Packaging Team | ||
| h | h | dialign | F | R | Segment-based multiple sequence alignment | v2.2.1-11 | Debian Med Packaging Team | ||
| h | h | dnapi | F | R | adapter prediction for small RNA sequencing - utils | v1.1-3 | Debian Med Packaging Team | ||
| h | h | drmaa | F | R | interface to DRMAA-compliant distributed resource management systems | v0.7.9-2 | Debian Med Packaging Team | ||
| h | h | dssp | F | R | protein secondary structure assignment based on 3D structure | v4.0.0-2 | Debian Med Packaging Team | ||
| h | h | elph | F | R | DNA/protein sequence motif finder | v1.0.1-5 | Debian Med Packaging Team | ||
| h | h | embassy-domainatrix | F | R | Extra EMBOSS commands to handle domain classification file | v0.1.660-4 | Debian Med Packaging Team | ||
| h | h | embassy-domalign | F | R | Extra EMBOSS commands for protein domain alignment | v0.1.660-4 | Debian Med Packaging Team | ||
| gone | non-free | h | h | embassy-phylip | F | R | v3.69.660-4 | Debian Med Packaging Team | |
| h | h | emboss-explorer | F | R | web-based GUI to EMBOSS | v2.2.0-11 | Debian Med Packaging Team | ||
| h | h | entangle | F | R | Tethered Camera Control & Capture | v3.0-1 | Debian PhotoTools Maintainers | ||
| h | h | epcr | F | R | Tool to test a DNA sequence for the presence of sequence tagged sites | v2.3.12-1-9 | Debian Med Packaging Team | ||
| h | h | exonerate | F | R | generic tool for pairwise sequence comparison | v2.4.0-5 | Debian Med Packaging Team | ||
| h | h | fastdnaml | F | R | Tool for construction of phylogenetic trees of DNA sequences | v1.2.2-15 | Debian Med Packaging Team | ||
| h | h | fastml | F | R | maximum likelihood ancestral amino-acid sequence reconstruction | v3.11-3 | Debian Med Packaging Team | ||
| h | h | fasttree | F | R | phylogenetic trees from alignments of nucleotide or protein sequences | v2.1.11-2 | Debian Med Packaging Team | ||
| h | h | figtree | F | R | graphical phylogenetic tree viewer | v1.4.4-5 | Debian Med Packaging Team | ||
| h | h | fitgcp | F | R | fitting genome coverage distributions with mixture models | v0.0.20150429-4 | Debian Med Packaging Team | ||
| h | h | flash | F | R | Fast Length Adjustment of SHort reads | v1.2.11-2 | Debian Med Packaging Team | ||
| h | h | foreign | F | R | GNU R package to read/write data from other stat. systems | v0.8.81-1 | Dirk Eddelbuettel | ||
| h | h | freeimage | F | R | v3.18.0+ds2-6 | Debian Science Maintainers | |||
| gone | h | h | freemedforms-project | F | R | set of medical applications for health professionals | v0.9.4-2 | Debian Med Packaging Team | |
| h | h | fsa | F | R | Fast Statistical Alignment of protein, RNA or DNA sequences | v1.15.9+dfsg-4 | Debian Med Packaging Team | ||
| non-free | h | h | fsl | F | R | transitional dummy package | v5.0.8-6 | NeuroDebian Team | |
| gone | h | h | fw4spl | F | R | FrameWork for Software Production Line | v17.2.0-2 | Debian Med Packaging Team | |
| h | h | gamgi | F | R | General Atomistic Modelling Graphic Interface (GAMGI) | v0.17.3-3 | Debichem Team | ||
| h | h | gasic | F | R | genome abundance similarity correction | v0.0.r19-7 | Debian Med Packaging Team | ||
| h | h | genometester | F | R | toolkit for performing set operations on k-mer lists | v4.0+git20200511.91cecb5+dfsg-1 | Debian Med Packaging Team | ||
| h | h | gentle | F | R | suite to plan genetic cloning | v1.9+cvs20100605+dfsg1-9 | Debian Med Packaging Team | ||
| h | h | getdata | F | R | management of external databases | v0.2-4 | Debian Med Packaging Team | ||
| h | h | ggd-utils | F | R | programs for use in ggd | v0.0.7+ds-3 | Debian Med Packaging Team | ||
| gone | h | h | giira | F | R | RNA-Seq driven gene finding incorporating ambiguous reads | v0.0.20140625-2 | Debian Med Packaging Team | |
| h | h | gjh-asl-json | F | R | gjh solver, like solver from AMPL Library | v0.0+git20180428.eb8720e-2 | Debian Med Packaging Team | ||
| h | h | glam2 | F | R | gapped protein motifs from unaligned sequences | v1064-9 | Debian Med Packaging Team | ||
| h | h | grinder | F | R | Versatile omics shotgun and amplicon sequencing read simulator | v0.5.4-6 | Debian Med Packaging Team | ||
| h | h | gsort | F | R | sort genomic data | v0.1.4-3 | Debian Med Packaging Team | ||
| h | h | hilive | F | R | realtime alignment of Illumina reads | v2.0a-3 | Debian Med Packaging Team | ||
| h | h | hmmer2 | F | R | profile hidden Markov models for protein sequence analysis | v2.3.2+dfsg-7 | Debian Med Packaging Team | ||
| h | h | hts-nim-tools | F | R | tools biological sequences: bam-filter, count-reads, vcf-check | v0.2.1-1 | Debian Med Packaging Team | ||
| h | h | idba | F | R | iterative De Bruijn Graph short read assemblers | v1.1.3-7 | Debian Med Packaging Team | ||
| h | h | igdiscover | F | R | analyzes antibody repertoires to find new V genes | v0.11-3 | Debian Med Packaging Team | ||
| h | h | iitii | F | R | Implicit Interval Tree with Interpolation Index | v0.0+git20191030.85209e0-2 | Debian Med Packaging Team | ||
| h | h | imagetooth | F | R | library generating images of teeth for odontograms | v2.0.1-3 | Debian Ruby Extras Maintainers | ||
| h | h | indelible | F | R | powerful and flexible simulator of biological evolution | v1.03-5 | Debian Med Packaging Team | ||
| h | h | infernal | F | R | inference of RNA secondary structural alignments | v1.1.4-1 | Debian Med Packaging Team | ||
| h | h | ipig | F | R | integrating PSMs into genome browser visualisations | v0.0.r5-4 | Debian Med Packaging Team | ||
| h | h | ismrmrd | F | R | v1.4.2.1-6 | Debian Med Packaging Team | |||
| h | h | jebl2 | F | R | v0.1+git20201011.969bd4b-1 | Debian Med Packaging Team | |||
| h | h | kmer | F | R | suite of tools for DNA sequence analysis | v0~20150903+r2013-8 | Debian Med Packaging Team | ||
| h | h | kmerresistance | F | R | correlates mapped genes with the predicted species of WGS samples | v2.2.0-2 | Debian Med Packaging Team | ||
| h | h | lagan | F | R | highly parametrizable pairwise global genome sequence aligner | v2.0-6 | Debian Med Packaging Team | ||
| h | h | lambda-align | F | R | Local Aligner for Massive Biological DatA | v1.0.3-6 | Debian Med Packaging Team | ||
| h | h | lambda-align2 | F | R | Local Aligner for Massive Biological DatA - v2 | v2.0.0-9 | Debian Med Packaging Team | ||
| h | h | libai-fann-perl | F | R | Perl wrapper for the FANN library | v0.10-5 | Debian Perl Group | ||
| h | h | libamplsolver | F | R | v0~20190702-2 | Debian Med Packaging Team | |||
| h | h | libatomicbitvector | F | R | atomic bitset/bitvector with size determined at runtime | v0.0+git20200519.e295358-2 | Debian Med Packaging Team | ||
| h | h | libbigwig | F | R | v0.4.4+dfsg-2 | Debian Med Packaging Team | |||
| h | h | libbio-alignio-stockholm-perl | F | R | stockholm sequence input/output stream | v1.7.3-2 | Debian Med Packaging Team | ||
| h | h | libbio-chado-schema-perl | F | R | DBIx::Class layer for the Chado database schema | v0.20000-3 | Debian Perl Group | ||
| h | h | libbio-cluster-perl | F | R | BioPerl cluster modules | v1.7.3-5 | Debian Med Packaging Team | ||
| h | h | libbio-coordinate-perl | F | R | BioPerl modules for working with biological coordinates | v1.7.1-4 | Debian Med Packaging Team | ||
| h | h | libbio-das-lite-perl | F | R | implementation of the BioDas protocol | v2.11-8 | Debian Med Packaging Team | ||
| h | h | libbio-db-hts-perl | F | R | Perl interface to the HTS library | v3.01-3 | Debian Med Packaging Team | ||
| h | h | libbio-db-refseq-perl | F | R | Database object interface for RefSeq retrieval | v1.7.4-1 | Debian Med Packaging Team | ||
| h | h | libbio-db-swissprot-perl | F | R | Database object interface to SwissProt retrieval | v1.7.4-1 | Debian Med Packaging Team | ||
| h | h | libbio-eutilities-perl | F | R | BioPerl interface to the Entrez Programming Utilities (E-utilities) | v1.77-1 | Debian Perl Group | ||
| h | h | libbio-featureio-perl | F | R | Modules for reading, writing, and manipulating sequence features | v1.6.905-2 | Debian Med Packaging Team | ||
| h | h | libbio-mage-perl | F | R | Container module for classes in the MAGE package: MAGE | v20030502.3-6 | Debian Med Packaging Team | ||
| h | h | libbio-mage-utils-perl | F | R | Extra modules for classes in the MAGE package: MAGE | v20030502.0-5 | Debian Med Packaging Team | ||
| h | h | libbio-primerdesigner-perl | F | R | Perl module to design PCR primers using primer3 and epcr | v0.07-8 | Debian Perl Group | ||
| h | h | libbio-procedural-perl | F | R | Simple low-dependency procedural interfaces to BioPerl | v1.7.4-2 | Debian Med Packaging Team | ||
| h | h | libbio-samtools-perl | F | R | Perl interface to SamTools library for DNA sequencing | v1.43-3 | Debian Perl Group | ||
| h | h | libbio-scf-perl | F | R | Perl extension for reading and writing SCF sequence files | v1.03-5 | Debian Perl Group | ||
| h | h | libbio-tools-run-remoteblast-perl | F | R | Object for remote execution of the NCBI Blast via HTTP | v1.7.3-3 | Debian Med Packaging Team | ||
| h | h | libcolt-free-java | F | R | scalable scientific and technical computing in Java | v1.2.0+dfsg-7 | Debian Med Packaging Team | ||
| h | h | libdistlib-java | F | R | Java library of statistical distribution functions | v1.0-2 | Debian Med Packaging Team | ||
| h | h | libdivsufsort | F | R | v2.0.1-5 | Debian Med Packaging Team | |||
| h | h | libflathashmap | F | R | very fast hashtable header only library | v0.0+git20180715.2c46874-2 | Debian Med Packaging Team | ||
| h | h | libfreecontact-perl | F | R | fast protein contact predictor - binding for Perl | v0.08-8 | Debian Med Packaging Team | ||
| h | h | libgenome-model-tools-music-perl | F | R | module for finding mutations of significance in cancer | v0.04-5 | Debian Perl Group | ||
| h | h | libgenome-perl | F | R | pipelines, tools, and data management for genomics | v0.06-6 | Debian Perl Group | ||
| h | h | libgkarrays | F | R | v2.1.0+dfsg-4 | Debian Med Packaging Team | |||
| h | h | libgtextutils | F | R | v0.7-7 | Debian Med Packaging Team | |||
| h | h | libips4o | F | R | In-place Parallel Super Scalar Samplesort | v0.0+git20190618.2206938-2 | Debian Med Packaging Team | ||
| h | h | libmems | F | R | v1.6.0+4725-9 | Debian Med Packaging Team | |||
| h | h | libmialm | F | R | v1.0.9-3 | Debian Med Packaging Team | |||
| h | h | libmmap-allocator | F | R | STL allocator that mmaps files | v0.4.0+git20200122.adbfbe1-1 | Debian Med Packaging Team | ||
| h | h | libmmmulti | F | R | v0.1-2 | Debian Med Packaging Team | |||
| h | h | libmuscle | F | R | v3.7+4565-7 | Debian Med Packaging Team | |||
| h | h | libnewuoa | F | R | v0.1.1-2 | Debian Med Packaging Team | |||
| h | h | libnhgri-blastall-perl | F | R | Perl extension for running and parsing NCBI's BLAST 2.x | v0.66-4 | Debian Perl Group | ||
| h | h | libpj-java | F | R | API and middleware for parallel programming in Java | v0.0~20150107+dfsg-4 | Debian Med Packaging Team | ||
| h | h | libpll | F | R | v0.3.2-4 | Debian Med Packaging Team | |||
| h | h | librg-blast-parser-perl | F | R | very fast NCBI BLAST parser - binding for Perl | v0.03-7 | Debian Med Packaging Team | ||
| h | h | librg-utils-perl | F | R | parsers and format conversion utilities used by (e.g.) profphd | v1.0.43-7 | Debian Med Packaging Team | ||
| h | h | librostlab | F | R | v1.0.20-10 | Debian Med Packaging Team | |||
| h | h | libsis-base-java | F | R | Base libraries used by software from the SIS division at ETH Zurich | v18.09~pre1+git20180928.45fbd31+dfsg-3 | Debian Med Packaging Team | ||
| h | h | libsis-jhdf5-java | F | R | easy-to-use HDF library for Java | v19.04.0+dfsg-4 | Debian Med Packaging Team | ||
| h | h | libsort-key-top-perl | F | R | Perl module to select and sort top n elements of a list | v0.08-4 | Debian Med Packaging Team | ||
| gone | h | h | libundead | F | R | v1.0.9-3 | Debian Med Packaging Team | ||
| h | h | libvistaio | F | R | v1.2.19-3 | Debian Med Packaging Team | |||
| h | h | libzerg | F | R | v1.0.7-11 | Debian Med Packaging Team | |||
| h | h | libzerg-perl | F | R | fast perl module for parsing the output of NCBI BLAST programs | v1.0.4-8 | Debian Med Packaging Team | ||
| loki | F | R | MCMC linkage analysis on general pedigrees | v2.4.7.4-10 | Debian Med Packaging Team | ||||
| h | h | ltrsift | F | R | postprocessing and classification of LTR retrotransposons | v1.0.2-9 | Debian Med Packaging Team | ||
| h | h | lucy | F | R | DNA sequence quality and vector trimming tool | v1.20-3 | Debian Med Packaging Team | ||
| h | h | maq | F | R | maps short fixed-length polymorphic DNA sequence reads to reference sequences | v0.7.1-9 | Debian Med Packaging Team | ||
| h | h | maqview | F | R | graphical read alignment viewer for short gene sequences | v0.2.5-10 | Debian Med Packaging Team | ||
| h | h | maude | F | R | high-performance logical framework | v3.1-2 | Debian Med Packaging Team | ||
| h | h | maxflow | F | R | v3.0.5-3 | Debian Med Packaging Team | |||
| h | h | mcl | F | R | Markov Cluster algorithm | v1:14-137+ds-9 | Debian Med Packaging Team | ||
| h | h | mecat2 | F | R | ultra-fast and accurate de novo assembly tools for SMRT reads | v0.0+git20200428.f54c542+ds-3 | Debian Med Packaging Team | ||
| h | h | melting | F | R | compute the melting temperature of nucleic acid duplex | v5.2.0-2 | Debian Med Packaging Team | ||
| h | h | mencal | F | R | menstruation calendar | v3.0-6 | Debian Med Packaging Team | ||
| h | h | metabat | F | R | robust statistical framework for reconstructing genomes from metagenomic data | v2.15-3 | Debian Med Packaging Team | ||
| h | h | metastudent-data-2 | F | R | predictor of Gene Ontology terms from protein sequence - data #2 | v1.0.0-5 | Debian Med Packaging Team | ||
| gone | non-free | h | h | mgltools-bhtree | F | R | Bhtree library extension module | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-cadd | F | R | Computer Aided Drug Discovery (CADD) Pipeline | v1.5.7-4 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-cmolkit | F | R | Python classes to interpret trajectories of Gromacs | v1.5.7~rc1+cvs.20140424-2 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-dejavu | F | R | visualization of 3D geometry using the OpenGL with Python | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-geomutils | F | R | Python library for geometric analyses | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-gle | F | R | GLE library Python extension | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-mglutil | F | R | Molecular Graphics Laboratory utility collection | v1.5.7-4 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-molkit | F | R | Python classes to read and manipulate molecules | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-networkeditor | F | R | Python GUI library for the editing of networks | v1.5.7-4 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-opengltk | F | R | Opengltk Python extension | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | mgltools-pmv | F | R | v1.5.7~rc1+cvs.20140424-1 | Debian Med Packaging Team | |||
| gone | non-free | h | h | mgltools-pyautodock | F | R | Python implementation of autodock | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-pybabel | F | R | molecular structure file access and interpretation | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-pyglf | F | R | GLF library Python extension to write text in OpenGL | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-scenario2 | F | R | Python-based viewer of molecular structures | v1.5.7-2 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-sff | F | R | Simple Force Field for Python | v1.5.6~rc3~cvs.20120206-1 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-support | F | R | Update mechanism of MGLTools | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-symserv | F | R | Symetry server | v1.5.7-2 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-utpackages | F | R | UT Austin software Python extensions | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-viewerframework | F | R | ViewerFramework supports building visualization applications | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-vision | F | R | Python-based Visual Programming Environment | v1.5.7+dfsg-2 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-visionlibraries | F | R | Extensions for Python-based Visual Programming Environment | v1.5.7-2 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-volume | F | R | Volume rendering Python package | v1.5.7-3 | Debian Med Packaging Team |
| gone | non-free | h | h | mgltools-webservices | F | R | webservices for components of autodocktools | v1.5.7-3 | Debian Med Packaging Team |
| h | h | mhap | F | R | locality-sensitive hashing to detect long-read overlaps | v2.1.3+dfsg-3 | Debian Med Packaging Team | ||
| h | h | miaviewit | F | R | v1.0.5-3 | Debian Med Packaging Team | |||
| h | h | mira | F | R | v4.9.6-5 | Debian Med Packaging Team | |||
| h | h | mlv-smile | F | R | Find statistically significant patterns in sequences | v1.47-8 | Debian Med Packaging Team | ||
| h | h | mmtf-python | F | R | binary encoding of biological structures (Python 3) | v1.1.2-3 | Debichem Team | ||
| h | h | mptp | F | R | single-locus species delimitation | v0.2.4-3 | Debian Med Packaging Team | ||
| gone | h | h | mrs | F | R | Information Retrieval System for Biomedical databanks | v6.0.5+dfsg-7 | Debian Med Packaging Team | |
| gone | h | h | mrtrix | F | R | diffusion-weighted MRI white matter tractography | v0.2.13-2 | NeuroDebian Team | |
| h | h | mustang | F | R | multiple structural alignment of proteins | v3.2.3-4 | Debian Med Packaging Team | ||
| h | h | nanostat | F | R | statistics on long biological sequences | v1.4.0-3 | Debian Med Packaging Team | ||
| h | h | ncbi-seg | F | R | tool to mask segments of low compositional complexity in amino acid sequences | v0.0.20000620-6 | Debian Med Packaging Team | ||
| h | h | ncbi-tools6 | F | R | v6.1.20170106+dfsg1-9 | Debian Med Packaging Team | |||
| h | h | neo | F | R | Python IO library for electrophysiological data formats | v0.9.0-1 | Debian Med Packaging Team | ||
| h | h | networkx | F | R | v2.5+ds-2 | Sandro Tosi | |||
| h | h | nifti2dicom | F | R | convert 3D medical images to DICOM 2D series | v0.4.11-3 | Debian Med Packaging Team | ||
| h | h | njplot | F | R | phylogenetic tree drawing program | v2.4-9 | Debian Med Packaging Team | ||
| h | h | norsnet | F | R | tool to identify unstructured loops in proteins | v1.0.17-6 | Debian Med Packaging Team | ||
| h | h | norsp | F | R | predictor of non-regular secondary structure | v1.0.6-6 | Debian Med Packaging Team | ||
| h | h | nutsqlite | F | R | Dietary nutrition analysis software | v2.0.6-3 | Debian Med Packaging Team | ||
| h | h | octave-dicom | F | R | manipulate DICOM files in Octave | v0.4.0-1 | Debian Octave Group | ||
| h | h | openslide | F | R | v3.4.1+dfsg-5 | Debian Med Packaging Team | |||
| h | h | openslide-python | F | R | v1.1.2-1 | Debian Med Packaging Team | |||
| h | h | pal2nal | F | R | converts proteins to genomic DNA alignment | v14.1-3 | Debian Med Packaging Team | ||
| h | h | paml | F | R | Phylogenetic Analysis by Maximum Likelihood (PAML) | v4.9j+dfsg-3 | Debian Med Packaging Team | ||
| h | h | papyrus | F | R | DICOM compatible file format library | v3.7.1+dfsg-4 | Debian Med Packaging Team | ||
| h | h | paw | F | R | Physics Analysis Workstation - a graphical analysis program | v1:2.14.04.dfsg.2-10 | Debian Science Maintainers | ||
| gone | h | h | pbalign | F | R | map Pacific Biosciences reads to reference DNA sequences | v0.3.2-1 | Debian Med Packaging Team | |
| h | h | pbbam | F | R | v1.6.0+dfsg-2 | Debian Med Packaging Team | |||
| gone | h | h | pbbarcode | F | R | annotate PacBio sequencing reads with barcode information | v0.8.0-5 | Debian Med Packaging Team | |
| gone | h | h | pbgenomicconsensus | F | R | Pacific Biosciences variant and consensus caller | v2.3.2-5 | Debian Med Packaging Team | |
| gone | h | h | pbh5tools | F | R | tools for manipulating Pacific Biosciences HDF5 files | v0.8.0+git20170929.58d54ff+dfsg-1 | Debian Med Packaging Team | |
| h | h | pbsim | F | R | simulator for PacBio sequencing reads | v1.0.3+git20180330.e014b1d+dfsg-2 | Debian Med Packaging Team | ||
| h | h | pcalendar | F | R | track menstrual cycles and predict fertility periods | v3.4.1-4 | Debian Med Packaging Team | ||
| h | h | pdb2pqr | F | R | Preparation of protein structures for electrostatics calculations | v2.1.1+dfsg-7 | Debian Med Packaging Team | ||
| h | h | perlprimer | F | R | Graphical design of primers for PCR | v1.2.4-2 | Debian Med Packaging Team | ||
| h | h | pftools | F | R | build and search protein and DNA generalized profiles | v3.2.6-1 | Debian Med Packaging Team | ||
| h | h | phipack | F | R | PHI test and other tests of recombination | v0.0.20160614-5 | Debian Med Packaging Team | ||
| h | h | phylip | F | R | package of programs for inferring phylogenies | v1:3.697+dfsg-2 | Debian Med Packaging Team | ||
| h | h | phyx | F | R | UNIX-style phylogenetic analyses on trees and sequences | v1.01+ds-2 | Debian Med Packaging Team | ||
| h | h | picopore | F | R | lossless compression of Nanopore files | v1.2.0-2 | Debian Med Packaging Team | ||
| h | h | piler | F | R | genomic repeat analysis | v0~20140707-3 | Debian Med Packaging Team | ||
| h | h | pngquant | F | R | PNG (Portable Network Graphics) image optimising utility | v2.13.1-1 | Debian PhotoTools Maintainers | ||
| h | h | poa | F | R | Partial Order Alignment for multiple sequence alignment | v2.0+20060928-8 | Debian Med Packaging Team | ||
| h | h | poretools | F | R | toolkit for nanopore nucleotide sequencing data | v0.6.0+dfsg-5 | Debian Med Packaging Team | ||
| h | h | prank | F | R | Probabilistic Alignment Kit for DNA, codon and amino-acid sequences | v0.0.170427+dfsg-3 | Debian Med Packaging Team | ||
| h | h | predictnls | F | R | prediction and analysis of protein nuclear localization signals | v1.0.20-6 | Debian Med Packaging Team | ||
| gone | h | h | predictprotein | F | R | suite of protein sequence analysis tools | v1.1.08-1 | Debian Med Packaging Team | |
| h | h | prinseq-lite | F | R | PReprocessing and INformation of SEQuence data (lite version) | v0.20.4-6 | Debian Med Packaging Team | ||
| h | h | proalign | F | R | Probabilistic multiple alignment program | v0.603-5 | Debian Med Packaging Team | ||
| h | h | probabel | F | R | Toolset for Genome-Wide Association Analysis | v0.5.0+dfsg-4 | Debian Med Packaging Team | ||
| h | h | probalign | F | R | multiple sequence alignment using partition function posterior probabilities | v1.4-9 | Debian Med Packaging Team | ||
| h | h | proda | F | R | multiple alignment of protein sequences | v1.0-13 | Debian Med Packaging Team | ||
| h | h | profbval | F | R | predictor of flexible/rigid protein residues from sequence | v1.0.22-7 | Debian Med Packaging Team | ||
| h | h | profisis | F | R | prediction of protein-protein interaction sites from sequence | v1.0.11-6 | Debian Med Packaging Team | ||
| h | h | profnet | F | R | v1.0.22-7 | Debian Med Packaging Team | |||
| h | h | profphd-utils | F | R | profphd helper utilities convert_seq and filter_hssp | v1.0.10-6 | Debian Med Packaging Team | ||
| h | h | progressivemauve | F | R | multiple genome alignment algorithms | v1.2.0+4713+dfsg-5 | Debian Med Packaging Team | ||
| h | h | pscan-chip | F | R | ChIP-based identifcation of TF binding sites | v1.1-3 | Debian Med Packaging Team | ||
| h | h | pscan-tfbs | F | R | search for transcription factor binding sites | v1.2.2-4 | Debian Med Packaging Team | ||
| h | h | psortb | F | R | bacterial localization prediction tool | v3.0.6+dfsg-2 | Debian Med Packaging Team | ||
| h | h | pybel | F | R | Biological Expression Language | v0.14.10-1 | Debian Med Packaging Team | ||
| h | h | pychopper | F | R | identify, orient and trim full-length Nanopore cDNA reads | v2.5.0-1 | Debian Med Packaging Team | ||
| h | h | pycorrfit | F | R | tool for fitting correlation curves on a logarithmic plot | v1.1.7+dfsg-1 | Debian Med Packaging Team | ||
| gone | h | h | pyepl | F | R | v1.1.0+git12-g365f8e3-3 | NeuroDebian Team | ||
| gone | h | h | pynast | F | R | alignment of short DNA sequences | v1.2.2-4 | Debian Med Packaging Team | |
| gone | h | h | pynifti | F | R | v0.20100607.1-4.1 | NeuroDebian Team | ||
| h | h | pyqi | F | R | Python framework for wrapping general commands in multiple interfaces | v0.3.2+dfsg-7 | Debian Med Packaging Team | ||
| h | h | pyscanfcs | F | R | scientific tool for perpendicular line scanning FCS | v0.3.6+ds-2 | Debian Med Packaging Team | ||
| h | h | python-airr | F | R | Data Representation Standard library for antibody and TCR sequences | v1.3.1-1 | Debian Science Maintainers | ||
| h | h | python-cgecore | F | R | Python3 module for the Center for Genomic Epidemiology | v1.5.6+ds-1 | Debian Med Packaging Team | ||
| h | h | python-deeptoolsintervals | F | R | v0.1.9-3 | Debian Med Packaging Team | |||
| h | h | python-etelemetry | F | R | lightweight Python3 client to communicate with the etelemetry server | v0.2.0-4 | Debian Med Packaging Team | ||
| h | h | python-gffutils | F | R | Work with GFF and GTF files in a flexible database framework | v0.10.1-2 | Debian Med Packaging Team | ||
| h | h | python-intervaltree-bio | F | R | Interval tree convenience classes for genomic data -- Python 3 library | v1.0.1-4 | Debian Med Packaging Team | ||
| gone | h | h | python-networkx | F | R | tool to create, manipulate and study complex networks | v2.2-1 | Sandro Tosi | |
| h | h | python-pbcommand | F | R | common command-line interface for Pacific Biosciences analysis modules | v2.1.1+git20201023.cc0ed3d-1 | Debian Med Packaging Team | ||
| h | h | python-py2bit | F | R | v0.3.0-6 | Debian Med Packaging Team | |||
| h | h | python-pymummer | F | R | Python 3 interface to MUMmer | v0.11.0-2 | Debian Med Packaging Team | ||
| h | h | python-tinyalign | F | R | v0.2-5 | Debian Med Packaging Team | |||
| h | h | qrisk2 | F | R | cardiovascular disease risk calculator | v0.1.20150729-5 | Debian Med Packaging Team | ||
| h | h | qtltools | F | R | Tool set for molecular QTL discovery and analysis | v1.3.1+dfsg-2 | Debian Med Packaging Team | ||
| h | h | quicktree | F | R | Neighbor-Joining algorithm for phylogenies | v2.5-5 | Debian Med Packaging Team | ||
| h | h | quitcount | F | R | Small tool which may help yourself quit smoking | v3.1.4-3 | Debian Med Packaging Team | ||
| gone | contrib | raccoon | F | R | v1.0b-1 | Debian Med Packaging Team | |||
| h | h | rasmol | F | R | visualization of biological macromolecules | v2.7.6.0-2 | Debian Science Maintainers | ||
| h | h | rate4site | F | R | detector of conserved amino-acid sites | v3.0.0-7 | Debian Med Packaging Team | ||
| h | h | r-cran-adephylo | F | R | GNU R exploratory analyses for the phylogenetic comparative method | v1.1-11-4 | Debian R Packages Maintainers | ||
| h | h | r-cran-amap | F | R | Another Multidimensional Analysis Package | v0.8-18-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-assertthat | F | R | GNU R easy pre and post assertions | v0.2.1-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-bit64 | F | R | GNU R S3 Class for Vectors of 64bit Integers | v4.0.5-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-biwt | F | R | biweight mean vector and covariance and correlation | v1.0-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-boolnet | F | R | assembling, analyzing and visualizing Boolean networks | v2.1.5-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-cmprsk | F | R | GNU R subdistribution analysis of competing risks | v2.2-10-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-covid19us | F | R | cases of COVID-19 in the United States prepared for GNU R | v0.1.7-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-diagnosismed | F | R | medical diagnostic test accuracy analysis toolkit | v0.2.3-7 | Debian R Packages Maintainers | ||
| h | h | r-cran-distory | F | R | GNU R distance between phylogenetic histories | v1.4.4-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-dynamictreecut | F | R | Methods for Detection of Clusters in Hierarchical Clustering | v1.63-1-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-epibasix | F | R | GNU R Elementary Epidemiological Functions | v1.5-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-epicalc | F | R | GNU R Epidemiological calculator | v2.15.1.0-5 | Debian R Packages Maintainers | ||
| h | h | r-cran-epitools | F | R | GNU R Epidemiology Tools for Data and Graphics | v1:0.5-10.1-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-fitbitscraper | F | R | Import your Fitbit data from the Fitbit's website into R | v0.1.8-6 | Debian R Packages Maintainers | ||
| h | h | r-cran-fitcoach | F | R | R package for analysis and retrieve data of Fitbit | v1.0-4 | Debian R Packages Maintainers | ||
| h | h | r-cran-genabel | F | R | GNU R package for genome-wide SNP association analysis | v1.8-0-4 | Debian R Packages Maintainers | ||
| h | h | r-cran-ica | F | R | Independent Component Analysis | v1.0-2-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-itertools | F | R | Iterator Tools | v0.1-3-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-kaos | F | R | Encoding of Sequences Based on Frequency Matrix Chaos | v0.1.2-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-lexrankr | F | R | extractive summarization of text with the LexRank algorithm | v0.5.2-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-medadherence | F | R | GNU R Medication Adherence: Commonly Used Definitions | v1.03-6 | Debian R Packages Maintainers | ||
| h | h | r-cran-mediana | F | R | clinical trial simulations | v1.0.8-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-metamix | F | R | GNU R bayesian mixture analysis for metagenomic community profiling | v0.3-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-natserv | F | R | GNU R 'NatureServe' Interface | v1.0.0+dfsg-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-nmf | F | R | GNU R framework to perform non-negative matrix factorization | v0.23.0-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-parmigene | F | R | Parallel Mutual Information to establish Gene Networks | v1.1.0-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-pheatmap | F | R | GNU R package to create pretty heatmaps | v1.0.12-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-phylobase | F | R | GNU R base package for phylogenetic structures and comparative data | v0.8.10-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-psy | F | R | GNU R procedures for psychometrics | v1.1-5 | Debian R Packages Maintainers | ||
| h | h | r-cran-psychometric | F | R | GNU R applied psychometric theory | v2.2-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-psyphy | F | R | functions for analyzing psychophysical data in GNU R | v0.2-2-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-pvclust | F | R | Hierarchical Clustering with P-Values via Multiscale Bootstrap | v2.2-0-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-randomforest | F | R | GNU R package implementing the random forest classificator | v4.6-14-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-rcpphnsw | F | R | R bindings for a Library for Approximate Nearest Neighbors | v0.3.0.9001+ds-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-rentrez | F | R | GNU R interface to the NCBI's EUtils API | v1.2.3+dfsg-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-rncl | F | R | GNU R interface to the Nexus Class Library | v0.8.4-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-rnexml | F | R | GNU R package for semantically rich I/O for the 'NeXML' format | v2.4.5+ds-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-rniftilib | F | R | GNU/R interface to NIFTICLIB | v0.0-35.r79-6 | Debian R Packages Maintainers | ||
| h | h | r-cran-robustrankaggreg | F | R | Methods for robust rank aggregation | v1.1-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-rocr | F | R | GNU R package to prepare and display ROC curves | v1.0-11-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-rook | F | R | web server interface for R | v1.1-1+dfsg-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-samr | F | R | GNU R significance analysis of microarrays | v3.0-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-seroincidence | F | R | GNU R seroincidence calculator tool | v2.0.0-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-snowfall | F | R | GNU R easier cluster computing (based on snow) | v1.84-6.1-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-spp | F | R | GNU R ChIP-seq processing pipeline | v1.16.0-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-tcr | F | R | Advanced Data Analysis of Immune Receptor Repertoires | v2.3.2+ds-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-tigger | F | R | Infers new Immunoglobulin alleles from Rep-Seq Data | v1.0.0-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-treescape | F | R | GNU R Statistical Exploration of Landscapes of Phylogenetic Trees | v1.10.18+dfsg-2 | Debian R Packages Maintainers | ||
| h | h | r-cran-tsne | F | R | t-distributed stochastic neighbor embedding for R (t-SNE) | v0.1-3-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-waveslim | F | R | GNU R wavelet routines for 1-, 2- and 3-D signal processing | v1.8.2-1 | Debian R Packages Maintainers | ||
| h | h | r-cran-wavethresh | F | R | GNU R wavelets statistics and transforms | v4.6.8-3 | Debian R Packages Maintainers | ||
| h | h | r-cran-webgestaltr | F | R | find over-represented properties in gene lists | v0.4.4-1 | Debian R Packages Maintainers | ||
| h | h | readseq | F | R | Conversion between sequence formats | v1-14 | Debian Med Packaging Team | ||
| h | h | recan | F | R | genetic distance plotting for recombination events analysis | v0.1.2-2 | Debian Med Packaging Team | ||
| h | h | relacy | F | R | meticulous synchronization algorithm verifier for relaxed memory models | v0.0+git20191025.acc09bb-2 | Debian Med Packaging Team | ||
| h | h | resfinder-db | F | R | ResFinder database is a curated database of acquired resistance genes | v0.0+git20200408.0322c0d-1 | Debian Med Packaging Team | ||
| h | h | rnahybrid | F | R | Fast and effective prediction of microRNA/target duplexes | v2.1.2-6 | Debian Med Packaging Team | ||
| h | h | r-other-ascat | F | R | Allele-Specific Copy Number Analysis of Tumours | v2.5.2-3 | Debian R Packages Maintainers | ||
| h | h | r-other-rajewsky-dropbead | F | R | Basic Exploration and Analysis of Drop-seq Data | v0.3.1+git20180221.d746c6f+ds-3 | Debian R Packages Maintainers | ||
| h | h | ruby-crb-blast | F | R | Run conditional reciprocal best blast | v0.6.9-4 | Debian Ruby Extras Maintainers | ||
| h | h | ruby-rgfa | F | R | parse, edit and write GFA format graphs in Ruby | v1.3.1+dfsg-2 | Debian Med Packaging Team | ||
| h | h | runcircos-gui | F | R | GUI tool to run circos | v0.0+git20200528.82dda8c-1 | Debian Med Packaging Team | ||
| h | h | saint | F | R | Significance Analysis of INTeractome | v2.5.0+dfsg-4 | Debian Med Packaging Team | ||
| h | h | sbmltoolbox | F | R | libsbml toolbox for octave and matlab | v4.1.0-5 | Debian Med Packaging Team | ||
| h | h | scrm | F | R | simulator of evolution of genetic sequences | v1.7.4-1 | Debian Med Packaging Team | ||
| h | h | scythe | F | R | Bayesian adaptor trimmer for sequencing reads | v0.994+git20141017.20d3cff-3 | Debian Med Packaging Team | ||
| h | h | seaview | F | R | Multiplatform interface for sequence alignment and phylogeny | v1:5.0.4-1 | Debian Med Packaging Team | ||
| h | h | seqtk | F | R | Fast and lightweight tool for processing sequences in the FASTA or FASTQ format | v1.3-2 | Debian Med Packaging Team | ||
| h | h | sibelia | F | R | comparative genomics tool | v3.0.7+dfsg-3 | Debian Med Packaging Team | ||
| h | h | sibsim4 | F | R | align expressed RNA sequences on a DNA template | v0.20-5 | Debian Med Packaging Team | ||
| h | h | sickle | F | R | windowed adaptive trimming tool for FASTQ files using quality | v1.33+git20150314.f3d6ae3-2 | Debian Med Packaging Team | ||
| h | h | sigma-align | F | R | Simple greedy multiple alignment of non-coding DNA sequences | v1.1.3-8 | Debian Med Packaging Team | ||
| h | h | sim4 | F | R | tool for aligning cDNA and genomic DNA | v0.0.20121010-8 | Debian Med Packaging Team | ||
| gone | h | h | sleepyhead | F | R | Sleep tracking software with a focus on monitoring CPAP treatment | v1.0.0-beta-2+dfsg-6 | Debian Med Packaging Team | |
| gone | h | h | smalr | F | R | interrogation of the methylation status of nucleotide sequencing reads | v1.1+dfsg-2 | Debian Med Packaging Team | |
| h | h | sniffles | F | R | structural variation caller using third-generation sequencing | v1.0.12b+ds-1 | Debian Med Packaging Team | ||
| h | h | snpomatic | F | R | fast, stringent short-read mapping software | v1.0-5 | Debian Med Packaging Team | ||
| h | h | soapdenovo | F | R | short-read assembly method to build de novo draft assembly | v1.05-6 | Debian Med Packaging Team | ||
| h | h | soapsnp | F | R | resequencing utility that can assemble consensus sequence of genomes | v1.03-4 | Debian Med Packaging Team | ||
| non-free | h | h | solvate | F | R | arranges water molecules around protein structures | v1.0-3 | Debian Med Packaging Team | |
| h | h | sortmerna | F | R | tool for filtering, mapping and OTU-picking NGS reads | v2.1-5 | Debian Med Packaging Team | ||
| h | h | sprai | F | R | single-pass sequencing read accuracy improver | v0.9.9.23+dfsg1-2 | Debian Med Packaging Team | ||
| h | h | squizz | F | R | Converter for genetic sequences and alignments | v0.99d+dfsg-3 | Debian Med Packaging Team | ||
| h | h | srf | F | R | v0.1+dfsg-7 | Debian Med Packaging Team | |||
| h | h | ssm | F | R | v1.4.0-2 | Debian Science Maintainers | |||
| h | h | staden | F | R | DNA sequence assembly (Gap4/Gap5), editing and analysis tools | v2.0.0+b11-4 | Debian Med Packaging Team | ||
| h | h | suitename | F | R | categorize each suite in an RNA backbone | v0.3.070919+git20180613.ebb1325-2 | Debian Med Packaging Team | ||
| h | h | sumaclust | F | R | fast and exact clustering of genomic sequences | v1.0.36+ds-1 | Debian Med Packaging Team | ||
| h | h | sumatra | F | R | fast and exact comparison and clustering of sequences | v1.0.36+ds-1 | Debian Med Packaging Team | ||
| h | h | surankco | F | R | Supervised Ranking of Contigs in de novo Assemblies | v0.0.r5+dfsg-3 | Debian Med Packaging Team | ||
| h | h | sweed | F | R | assessment of SNPs for their evolutionary advantage | v3.2.1+dfsg-5 | Debian Med Packaging Team | ||
| h | h | tao-config | F | R | v0.0+git20200604.84a7383-2 | Debian Med Packaging Team | |||
| h | h | tao-json | F | R | v0.0+git20200604.f357d72-2 | Debian Med Packaging Team | |||
| h | h | t-coffee | F | R | Multiple Sequence Alignment | v13.41.0.28bdc39+dfsg-4 | Debian Med Packaging Team | ||
| h | h | thesias | F | R | Testing Haplotype Effects In Association Studies | v3.1.1-1 | Debian Med Packaging Team | ||
| gone | h | h | tophat | F | R | fast splice junction mapper for RNA-Seq reads | v2.1.1+dfsg1-2 | Debian Med Packaging Team | |
| h | h | tophat-recondition | F | R | post-processor for TopHat unmapped reads | v1.4-3 | Debian Med Packaging Team | ||
| h | h | trace2dbest | F | R | bulk submission of chromatogram data to dbEST | v3.0.1-2 | Debian Med Packaging Team | ||
| h | h | tracetuner | F | R | interpretation of DNA Sanger sequencing data | v3.0.6~beta+dfsg-3 | Debian Med Packaging Team | ||
| h | h | transtermhp | F | R | find rho-independent transcription terminators in bacterial genomes | v2.09-5 | Debian Med Packaging Team | ||
| h | h | treeviewx | F | R | Displays and prints phylogenetic trees | v0.5.1+git20100823.7e4d0e9-3 | Debian Med Packaging Team | ||
| h | h | trimage | F | R | GUI and command-line interface to optimize image files | v1.0.6-1 | Debian PhotoTools Maintainers | ||
| h | h | trimmomatic | F | R | flexible read trimming tool for Illumina NGS data | v0.39+dfsg-2 | Debian Med Packaging Team | ||
| h | h | varna | F | R | Visualization Applet for RNA | v3-93+ds-3 | Debian Med Packaging Team | ||
| non-free | h | h | vienna-rna | F | R | RNA sequence analysis | v2.4.17+dfsg-2 | Debian Med Packaging Team | |
| h | h | viewmol | F | R | graphical front end for computational chemistry programs | v2.4.1-26 | Debichem Team | ||
| h | h | volpack | F | R | v1.0b3-9 | Debian Med Packaging Team | |||
| h | h | vt | F | R | toolset for short variant discovery in genetic sequence data | v0.57721+ds-3 | Debian Med Packaging Team | ||
| h | h | wise | F | R | comparison of biopolymers, like DNA and protein sequences | v2.4.1-23 | Debian Med Packaging Team | ||
| h | h | zalign | F | R | parallel local alignment of biological sequences | v0.9.1-5 | Debian Med Packaging Team |