Packages with last news in 2021 from Debian Tracker.
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Last news years Medical: 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2003gone | not main | h | h | Debian Tracker | F | R | short description | version in Debian | Debian maintainer |
---|---|---|---|---|---|---|---|---|---|
h | h | abyss | F | R | de novo, parallel, sequence assembler for short reads | v2.3.3-2 | Debian Med Packaging Team | ||
h | h | acedb | F | R | v4.9.39+dfsg.02-7 | Debian Med Packaging Team | |||
h | h | adapterremoval | F | R | rapid adapter trimming, identification, and read merging of gene sequences | v2.3.2-1 | Debian Med Packaging Team | ||
h | h | aevol | F | R | digital genetics model to run Evolution Experiments in silico | v5.0+ds-3 | Debian Med Packaging Team | ||
h | h | allelecount | F | R | NGS copy number algorithms | v4.3.0-1.1 | Debian Med Packaging Team | ||
h | h | alter-sequence-alignment | F | R | genomic sequences ALignment Transformation EnviRonment | v1.3.4-6 | Debian Med Packaging Team | ||
h | h | altree | F | R | program to perform phylogeny-based association and localization analysis | v1.3.2-1 | Debian Med Packaging Team | ||
h | h | ampliconnoise | F | R | removal of noise from 454 sequenced PCR amplicons | v1.29-10 | Debian Med Packaging Team | ||
h | h | andi | F | R | Efficient Estimation of Evolutionary Distances | v0.14-2 | Debian Med Packaging Team | ||
h | h | anfo | F | R | Short Read Aligner/Mapper from MPG | v0.98-9 | Debian Med Packaging Team | ||
non-free | h | h | arb | F | R | phylogenetic sequence analysis suite - main program | v6.0.6-5 | Debian Med Packaging Team | |
h | h | argh | F | R | C++ header-only command line processing library | v1.3.1+ds-3 | Debian Med Packaging Team | ||
h | h | ariba | F | R | Antibiotic Resistance Identification By Assembly | v2.14.6+ds-3 | Debian Med Packaging Team | ||
h | h | artemis | F | R | genome browser and annotation tool | v18.1.0+dfsg-6 | Debian Med Packaging Team | ||
h | h | assembly-stats | F | R | get assembly statistics from FASTA and FASTQ files | v1.0.1+ds-5 | Debian Med Packaging Team | ||
h | h | assemblytics | F | R | detect and analyze structural variants from a genome assembly | v1.2.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | ataqv | F | R | ATAC-seq QC and visualization | v1.2.1+ds-2 | Debian Med Packaging Team | ||
h | h | augur | F | R | pipeline components for real-time virus analysis | v13.0.2-2 | Debian Med Packaging Team | ||
h | h | augustus | F | R | gene prediction in eukaryotic genomes | v3.4.0+dfsg2-3 | Debian Med Packaging Team | ||
h | h | avogadro | F | R | Molecular Graphics and Modelling System | v1.95.1-2 | Debichem Team | ||
h | h | axe-demultiplexer | F | R | Trie-based DNA sequencing read demultiplexer | v0.3.3+dfsg-3 | Debian Med Packaging Team | ||
h | h | bali-phy | F | R | Bayesian Inference of Alignment and Phylogeny | v3.6.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | ball | F | R | v1.5.0+git20180813.37fc53c-10 | Debian Med Packaging Team | |||
h | h | bambamc | F | R | v0.0.50-6 | Debian Med Packaging Team | |||
h | h | bamclipper | F | R | Remove gene-specific primer sequences from SAM/BAM alignments | v1.0.0-2 | Debian Med Packaging Team | ||
h | h | bamkit | F | R | tools for common BAM file manipulations | v0.0.1+git20170413.ccd079d-3 | Debian Med Packaging Team | ||
h | h | bamtools | F | R | toolkit for manipulating BAM (genome alignment) files | v2.5.1+dfsg-10 | Debian Med Packaging Team | ||
h | h | bandage | F | R | Bioinformatics Application for Navigating De novo Assembly Graphs Easily | v0.8.1-5 | Debian Med Packaging Team | ||
h | h | bart | F | R | tools for computational magnetic resonance imaging | v0.7.00-2 | Debian Med Packaging Team | ||
contrib | h | h | bart-cuda | F | R | tools for computational magnetic resonance imaging | v0.7.00-5 | Debian Med Packaging Team | |
h | h | bart-view | F | R | viewer for multi-dimensional complex-valued data | v0.1.00-6 | Debian Med Packaging Team | ||
h | h | bbhash | F | R | bloom-filter based minimal perfect hash function library | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | bbmap | F | R | BBTools genomic aligner and other tools for short sequences | v38.94+dfsg-2 | Debian Med Packaging Team | ||
h | h | bcalm | F | R | de Bruijn compaction in low memory | v2.2.3-2 | Debian Med Packaging Team | ||
contrib | h | h | bcbio | F | R | toolkit for analysing high-throughput sequencing data | v1.2.5-1 | Debian Med Packaging Team | |
h | h | bcftools | F | R | genomic variant calling and manipulation of VCF/BCF files | v1.13-1 | Debian Med Packaging Team | ||
h | h | beads | F | R | 2-DE electrophoresis gel image spot detection | v1.1.20-3 | Debian Med Packaging Team | ||
h | h | beagle | F | R | Genotype calling, genotype phasing and imputation of ungenotyped markers | v5.2-210628-2 | Debian Med Packaging Team | ||
h | h | beast2-mcmc | F | R | Bayesian MCMC phylogenetic inference | v2.6.6+dfsg-2 | Debian Med Packaging Team | ||
h | h | beast-mcmc | F | R | Bayesian MCMC phylogenetic inference | v1.10.4+dfsg-3 | Debian Med Packaging Team | ||
h | h | bedops | F | R | high-performance genomic feature operations | v2.4.40+dfsg-1 | Debian Med Packaging Team | ||
h | h | bedtools | F | R | suite of utilities for comparing genomic features | v2.30.0+dfsg-2 | Debian Med Packaging Team | ||
h | h | berkeley-express | F | R | Streaming quantification for high-throughput sequencing | v1.5.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | biber | F | R | Much-augmented BibTeX replacement for BibLaTeX users | v2.16-2 | Debian TeX maintainers | ||
h | h | bioawk | F | R | extension of awk for biological sequence analysis | v1.0-4 | Debian Med Packaging Team | ||
h | h | biobambam2 | F | R | tools for early stage alignment file processing | v2.0.183+ds-1 | Debian Med Packaging Team | ||
h | h | biojava4-live | F | R | v4.2.12+dfsg-6 | Debian Med Packaging Team | |||
h | h | biojava-live | F | R | v1:1.7.1-9 | Debian Med Packaging Team | |||
h | h | biomaj3 | F | R | BioMAJ workflow management library | v3.1.18-2 | Debian Med Packaging Team | ||
h | h | biomaj3-core | F | R | BioMAJ core library - Python 3.X | v3.0.26-1 | Debian Med Packaging Team | ||
h | h | biomaj3-daemon | F | R | BioMAJ daemon library | v3.0.22-2 | Debian Med Packaging Team | ||
h | h | biomaj3-download | F | R | BioMAJ download management library | v3.2.4-1 | Debian Med Packaging Team | ||
h | h | biomaj3-process | F | R | BioMAJ process management library | v3.0.16-1 | Debian Med Packaging Team | ||
h | h | biomaj3-zipkin | F | R | BioMAJ zipkin log tracing library | v0.2.2-3 | Debian Med Packaging Team | ||
h | h | bioperl | F | R | Perl tools for computational molecular biology | v1.7.8-1 | Debian Med Packaging Team | ||
h | h | bioperl-run | F | R | BioPerl wrappers: scripts | v1.7.3-7 | Debian Med Packaging Team | ||
h | h | biosig | F | R | v2.3.3-1 | Debian Med Packaging Team | |||
h | h | bio-vcf | F | R | domain specific language (DSL) for processing the VCF format | v0.9.5-3 | Debian Med Packaging Team | ||
h | h | bitseq | F | R | Bayesian Inference of Transcripts from Sequencing Data | v0.7.5+dfsg-6 | Debian Med Packaging Team | ||
h | h | blasr | F | R | mapping single-molecule sequencing reads | v5.3.5+dfsg-1 | Debian Med Packaging Team | ||
blends | F | R | v0.7.4 | Debian Pure Blend Team | |||||
h | h | bmtk | F | R | v0.0.9+ds-1 | Debian Med Packaging Team | |||
h | h | bolt-lmm | F | R | Efficient large cohorts genome-wide Bayesian mixed-model association testing | v2.3.6+dfsg-1 | Debian Med Packaging Team | ||
h | h | bowtie | F | R | Ultrafast memory-efficient short read aligner | v1.3.1-1 | Debian Med Packaging Team | ||
h | h | bowtie2 | F | R | ultrafast memory-efficient short read aligner | v2.4.4-1 | Debian Med Packaging Team | ||
h | h | boxer | F | R | system deployment ninja tricks | v1.4.2-2 | Debian Perl Group | ||
h | h | boxer-data | F | R | classes and nodes usable by Boxer | v10.9.5 | Boxer developers | ||
h | h | bppphyview | F | R | Bio++ Phylogenetic Viewer | v0.6.1-3 | Debian Med Packaging Team | ||
h | h | brian | F | R | v2.4.2-8 | Debian Med Packaging Team | |||
h | h | busco | F | R | benchmarking sets of universal single-copy orthologs | v5.2.2-2 | Debian Med Packaging Team | ||
h | h | bustools | F | R | program for manipulating BUS files for single cell RNA-Seq datasets | v0.41.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | bwa | F | R | Burrows-Wheeler Aligner | v0.7.17-6 | Debian Med Packaging Team | ||
non-free | h | h | caftools | F | R | maintenance of DNA sequence assemblies | v2.0.3-1 | Steffen Moeller | |
h | h | camitk | F | R | v4.1.2-4 | Debian Med Packaging Team | |||
h | h | camp | F | R | v0.8.4-4 | Debian Med Packaging Team | |||
h | h | canu | F | R | single molecule sequence assembler for genomes | v2.0+dfsg-2 | Debian Med Packaging Team | ||
h | h | capsule-maven-nextflow | F | R | packaging tool for Java applications with Maven coordinates | v1.0.3.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | capsule-nextflow | F | R | packaging and deployment tool for Java applications | v1.1.0+dfsg-3 | Debian Med Packaging Team | ||
h | h | cat-bat | F | R | taxonomic classification of contigs and metagenome-assembled genomes (MAGs) | v5.2.3-1 | Debian Med Packaging Team | ||
h | h | cct | F | R | visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences | v1:1.0.2-1 | Debian Med Packaging Team | ||
h | h | cdbfasta | F | R | Constant DataBase indexing and retrieval tools for multi-FASTA files | v1.00+git20181005.014498c+dfsg-4 | Debian Med Packaging Team | ||
h | h | cd-hit | F | R | suite of programs designed to quickly group sequences | v4.8.1-4 | Debian Med Packaging Team | ||
h | h | cdk | F | R | Chemistry Development Kit (CDK) Java libraries | v1:2.6-1 | Debian Java Maintainers | ||
h | h | centrifuge | F | R | rapid and memory-efficient system for classification of DNA sequences | v1.0.3-10 | Debian Med Packaging Team | ||
h | h | changeo | F | R | Repertoire clonal assignment toolkit (Python 3) | v1.2.0-1 | Debian Med Packaging Team | ||
h | h | charls | F | R | v2.2.0+dfsg-4 | Debian Med Packaging Team | |||
h | h | chromhmm | F | R | Chromatin state discovery and characterization | v1.23+dfsg-1 | Debian Med Packaging Team | ||
h | h | chromimpute | F | R | Large-scale systematic epigenome imputation | v1.0.3+dfsg-3 | Debian Med Packaging Team | ||
h | h | ciftilib | F | R | v1.6.0-2 | Debian Med Packaging Team | |||
h | h | cif-tools | F | R | Suite of tools to manipulate, validate and query mmCIF files | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | cimg | F | R | v2.9.4+dfsg-3 | Debian Science Maintainers | |||
h | h | circlator | F | R | circularize genome assemblies | v1.5.6-6 | Debian Med Packaging Team | ||
h | h | civetweb | F | R | embeddable web server with optional CGI, SSL and Lua support | v1.15+dfsg-3 | Debian Med Packaging Team | ||
h | h | clearcut | F | R | extremely efficient phylogenetic tree reconstruction | v1.0.9+git20150622.7658e90-1 | Debian Med Packaging Team | ||
h | h | clonalframe | F | R | inference of bacterial microevolution using multilocus sequence data | v1.2-11 | Debian Med Packaging Team | ||
h | h | clonalframeml | F | R | Efficient Inference of Recombination in Whole Bacterial Genomes | v1.12-2 | Debian Med Packaging Team | ||
h | h | clonalorigin | F | R | inference of homologous recombination in bacteria using whole genome sequences | v1.0-6 | Debian Med Packaging Team | ||
h | h | cl-pubmed | F | R | Common Lisp package to query Pubmed medical literature database | v2.1.3-5.1 | Kevin M. Rosenberg | ||
h | h | cmtk | F | R | Computational Morphometry Toolkit | v3.3.1p2+dfsg-1 | Debian Med Packaging Team | ||
h | h | cnrun | F | R | v2.1.0-3 | Debian Med Packaging Team | |||
h | h | cnvkit | F | R | Copy number variant detection from targeted DNA sequencing | v0.9.9-2 | Debian Med Packaging Team | ||
h | h | codonw | F | R | Correspondence Analysis of Codon Usage | v1.4.4-6 | Debian Med Packaging Team | ||
h | h | coils | F | R | coiled coil secondary structure prediction | v2002-9 | Debian Med Packaging Team | ||
h | h | concurrentqueue | F | R | industrial-strength lock-free queue for C++ | v1.0.3+ds-1 | Debian Med Packaging Team | ||
h | h | conda-package-handling | F | R | create and extract conda packages of various formats | v1.7.3-2 | Debian Med Packaging Team | ||
h | h | consensuscore | F | R | v1.1.1+dfsg-3 | Debian Med Packaging Team | |||
h | h | covtobed | F | R | convert the coverage track from a BAM file into a BED file | v1.3.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | crac | F | R | integrated RNA-Seq read analysis | v2.5.2+dfsg-5 | Debian Med Packaging Team | ||
h | h | cronometer | F | R | CRON-o-Meter - Exercise and nutrient intake tracker | v0.9.9+dfsg1-1 | Debian Java Maintainers | ||
h | h | ctdconverter | F | R | Convert CTD files into Galaxy tool and CWL CommandLineTool files | v2.1-4 | Debian Med Packaging Team | ||
h | h | ctdopts | F | R | Gives your Python tools a CTD-compatible interface | v1.5-1 | Debian Med Packaging Team | ||
h | h | cthreadpool | F | R | minimal ANSI C thread pool - development files | v0.0+git20201207.b259a6e-1 | Debian Science Maintainers | ||
h | h | ctsim | F | R | Computed tomography simulator | v6.0.2-5 | Debian Med Packaging Team | ||
non-free | h | h | cufflinks | F | R | Transcript assembly, differential expression and regulation for RNA-Seq | v2.2.1+dfsg.1-9 | Debian Med Packaging Team | |
h | h | cutesv | F | R | comprehensive discovery of structural variations of genomic sequences | v1.0.12-1 | Debian Med Packaging Team | ||
h | h | cwlformat | F | R | code formatter for Common Workflow Language | v2021.01.05-1 | Debian Med Packaging Team | ||
h | h | cwltool | F | R | Common Workflow Language reference implementation | v3.1.20211104071347-3 | Debian Med Packaging Team | ||
h | h | cyvcf2 | F | R | VCF parser based on htslib (Python 3) | v0.30.14-1 | Debian Med Packaging Team | ||
h | h | damapper | F | R | long read to reference genome mapping tool | v0.0+git20210330.ab45103-1 | Debian Med Packaging Team | ||
h | h | dascrubber | F | R | alignment-based scrubbing pipeline for DNA sequencing reads | v1.1-4 | Debian Med Packaging Team | ||
h | h | datamash | F | R | statistics tool for command-line interface | v1.7-2 | Debian Science Maintainers | ||
h | h | dawg | F | R | simulate the evolution of recombinant DNA sequences | v1.2-4 | Debian Med Packaging Team | ||
h | h | dazzdb | F | R | manage nucleotide sequencing read data | v1.0+git20201103.8d98c37-1.1 | Debian Med Packaging Team | ||
h | h | dcm2niix | F | R | next generation DICOM to NIfTI converter | v1.0.20211006-1 | Debian Med Packaging Team | ||
h | h | dcmstack | F | R | DICOM to NIfTI conversion - python3 package | v0.8-3 | Debian Med Packaging Team | ||
h | h | dcmtk | F | R | OFFIS DICOM toolkit command line utilities | v3.6.6-4 | Debian Med Packaging Team | ||
debian-med | F | R | v3.7 | Debian Med Packaging Team | |||||
h | h | debian-science | F | R | v1.14.2 | Debian Science Maintainers | |||
h | h | delly | F | R | Structural variant discovery by read analysis | v0.8.7-1 | Debian Med Packaging Team | ||
h | h | density-fitness | F | R | Calculates per-residue electron density scores | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | dextractor | F | R | (d)extractor and compression command library | v1.0-5 | Debian Med Packaging Team | ||
h | h | dialign-t | F | R | v1.0.2-14 | Debian Med Packaging Team | |||
h | h | diamond-aligner | F | R | accelerated BLAST compatible local sequence aligner | v2.0.13-1 | Debian Med Packaging Team | ||
h | h | dicom3tools | F | R | DICOM medical image files manipulation and conversion tools | v1.00~20211009110822-1 | Debian Med Packaging Team | ||
h | h | dicomnifti | F | R | converts DICOM files into the NIfTI format | v2.33.1-3 | Debian Med Packaging Team | ||
h | h | dicompyler | F | R | radiation therapy research platform | v0.4.2.0+git20200106.2643e0e-1 | Debian Med Packaging Team | ||
h | h | dicomscope | F | R | OFFIS DICOM Viewer | v3.6.0-23 | Debian Med Packaging Team | ||
gone | h | h | dindel | F | R | determines indel calls from short-read data | v1.01-wu1-3+dfsg-1 | Debian Med Packaging Team | |
h | h | dipy | F | R | v1.4.1-1 | Debian Med Packaging Team | |||
h | h | discosnp | F | R | discovering Single Nucleotide Polymorphism from raw set(s) of reads | v1:2.6.1-1 | Debian Med Packaging Team | ||
h | h | disulfinder | F | R | cysteines disulfide bonding state and connectivity predictor | v1.2.11-11 | Debian Med Packaging Team | ||
h | h | drop-seq | F | R | v2.4.1+dfsg-1 | Debian Med Packaging Team | |||
h | h | dwgsim | F | R | short sequencing read simulator | v0.1.12-5 | Debian Med Packaging Team | ||
h | h | ea-utils | F | R | command-line tools for processing biological sequencing data | v1.1.2+dfsg-9 | Debian Med Packaging Team | ||
h | h | ecopcr | F | R | estimate PCR barcode primers quality | v1.0.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | edfbrowser | F | R | viewer for biosignal storage files such as bdf and edf | v1.88+dfsg-1 | Debian Med Packaging Team | ||
h | h | edflib | F | R | v1.20-1 | Debian Med Packaging Team | |||
h | h | edtsurf | F | R | triangulated mesh surfaces for protein structures | v0.2009-10 | Debian Med Packaging Team | ||
h | h | eegdev | F | R | v0.2-6 | Debian Med Packaging Team | |||
h | h | eigensoft | F | R | reduction of population bias for genetic analyses | v7.2.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | elastix | F | R | toolbox for rigid and nonrigid registration of images | v5.0.1-2 | Debian Med Packaging Team | ||
h | h | emboss | F | R | European molecular biology open software suite | v6.6.0+dfsg-10 | Debian Med Packaging Team | ||
h | h | e-mem | F | R | Efficient computation of Maximal Exact Matches for very large genomes | v1.0.1-5 | Debian Med Packaging Team | ||
h | h | emperor | F | R | v1.0.3+ds-2 | Debian Med Packaging Team | |||
h | h | enlighten | F | R | v1.7.2-1 | Debian Med Packaging Team | |||
h | h | epigrass | F | R | scientific tool for simulations and scenario analysis in network epidemiology | v3.0.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | estscan | F | R | ORF-independent detector of coding DNA sequences | v3.0.3-6 | Debian Med Packaging Team | ||
h | h | examl | F | R | Exascale Maximum Likelihood (ExaML) code for phylogenetic inference | v3.0.22-2 | Debian Med Packaging Team | ||
h | h | fast5 | F | R | utilities for manipulating Oxford Nanopore Fast5 files | v0.6.5-5 | Debian Med Packaging Team | ||
h | h | fasta3 | F | R | tools for searching collections of biological sequences | v36.3.8h.2020-02-11-4 | Debian Med Packaging Team | ||
h | h | fastani | F | R | Fast alignment-free computation of whole-genome Average Nucleotide Identity | v1.33-2 | Debian Med Packaging Team | ||
h | h | fastaq | F | R | FASTA and FASTQ file manipulation tools | v3.17.0-4 | Debian Med Packaging Team | ||
h | h | fastlink | F | R | faster version of pedigree programs of Linkage | v4.1P-fix100+dfsg-4 | Debian Med Packaging Team | ||
h | h | fastp | F | R | Ultra-fast all-in-one FASTQ preprocessor | v0.23.2+dfsg-2 | Debian Med Packaging Team | ||
h | h | fastqc | F | R | quality control for high throughput sequence data | v0.11.9+dfsg-5 | Debian Med Packaging Team | ||
h | h | fastq-pair | F | R | Rewrites paired end fastq so all reads have a mate to separate out singletons | v1.0-2 | Debian Med Packaging Team | ||
h | h | fastqtl | F | R | Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes | v2.184+dfsg-8 | Debian Med Packaging Team | ||
h | h | fermi-lite | F | R | v0.1+git20190320.b499514-1 | Debian Med Packaging Team | |||
h | h | ffindex | F | R | simple index/database for huge amounts of small files | v0.9.9.9-5 | Debian Med Packaging Team | ||
h | h | filtlong | F | R | quality filtering tool for long reads of genome sequences | v0.2.1-1 | Debian Med Packaging Team | ||
h | h | fis-gtm | F | R | metapackage for the latest version of FIS-GT.M database | v6.3-014-3 | Debian Med Packaging Team | ||
h | h | flexbar | F | R | flexible barcode and adapter removal for sequencing platforms | v1:3.5.0-4 | Debian Med Packaging Team | ||
h | h | freebayes | F | R | Bayesian haplotype-based polymorphism discovery and genotyping | v1.3.5-3 | Debian Med Packaging Team | ||
h | h | freecontact | F | R | fast protein contact predictor | v1.0.21-11 | Debian Med Packaging Team | ||
h | h | fsm-lite | F | R | frequency-based string mining (lite) | v1.0-7 | Debian Med Packaging Team | ||
h | h | g2 | F | R | v0.72-10 | Debian Med Packaging Team | |||
h | h | galileo | F | R | Utility to securely synchronize a Fitbit device with the Fitbit web service | v0.5.1-8 | Debian Med Packaging Team | ||
h | h | garli | F | R | phylogenetic analysis of molecular sequence data using maximum-likelihood | v2.1-5 | Debian Med Packaging Team | ||
h | h | gatb-core | F | R | Genome Analysis Toolbox with de-Bruijn graph | v1.4.2+dfsg-8 | Debian Med Packaging Team | ||
h | h | gbrowse | F | R | GMOD Generic Genome Browser | v2.56+dfsg-9 | Debian Med Packaging Team | ||
h | h | gdcm | F | R | v3.0.10-1 | Debian Med Packaging Team | |||
h | h | gdpc | F | R | visualiser of molecular dynamic simulations | v2.2.5-15 | Debian Med Packaging Team | ||
h | h | gemma | F | R | Genome-wide Efficient Mixed Model Association | v0.98.5+dfsg-1 | Debian Med Packaging Team | ||
h | h | genomethreader | F | R | software tool to compute gene structure predictions | v1.7.3+dfsg-6 | Debian Med Packaging Team | ||
h | h | genometools | F | R | versatile genome analysis toolkit | v1.6.2+ds-2 | Debian Med Packaging Team | ||
h | h | gfapy | F | R | flexible and extensible software library for handling sequence graphs | v1.2.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | gff2aplot | F | R | pair-wise alignment-plots for genomic sequences in PostScript | v2.0-14 | Debian Med Packaging Team | ||
h | h | gff2ps | F | R | produces PostScript graphical output from GFF-files | v0.98l-6 | Debian Med Packaging Team | ||
h | h | gffread | F | R | GFF/GTF format conversions, region filtering, FASTA sequence extraction | v0.12.7-2 | Debian Med Packaging Team | ||
h | h | ghemical | F | R | GNOME molecular modelling environment | v3.0.0-5 | Debichem Team | ||
h | h | ghmm | F | R | General Hidden-Markov-Model library - tools | v0.9~rc3-4 | Debian Med Packaging Team | ||
h | h | gifticlib | F | R | v1.0.9-4 | Debian Med Packaging Team | |||
gone | h | h | ginkgocadx | F | R | Medical Imaging Software and complete DICOM Viewer | v3.8.8-5 | Debian Med Packaging Team | |
h | h | gmap | F | R | spliced and SNP-tolerant alignment for mRNA and short reads | v2021-08-25+ds-1 | Debian Med Packaging Team | ||
h | h | gmic | F | R | GREYC's Magic for Image Computing | v2.9.4-4 | Bernd Zeimetz | ||
h | h | gnumed-client | F | R | medical practice management - Client | v1.8.6+dfsg-1 | Debian Med Packaging Team | ||
h | h | gnumed-server | F | R | medical practice management - server | v22.16-2 | Debian Med Packaging Team | ||
h | h | golang-github-biogo-hts | F | R | biogo high throughput sequencing repository | v1.4.3+dfsg1-1 | Debian Go Packaging Team | ||
h | h | golang-github-dataence-porter2 | F | R | v0.0~git20150829.56e4718-5 | Debian Go Packaging Team | |||
h | h | goldencheetah | F | R | set of analysis tools for cycling performance | v1:3.5-1.1 | KURASHIKI Satoru | ||
h | h | grabix | F | R | wee tool for random access into BGZF files | v0.1.7-3 | Debian Med Packaging Team | ||
h | h | graphlan | F | R | circular representations of taxonomic and phylogenetic trees | v1.1.3-4 | Debian Med Packaging Team | ||
h | h | gromacs | F | R | Molecular dynamics simulator, with building and analysis tools | v2021.4-2 | Debichem Team | ||
h | h | gubbins | F | R | phylogenetic analysis of genome sequences | v2.4.1-4 | Debian Med Packaging Team | ||
h | h | gwama | F | R | Genome-Wide Association Meta Analysis | v2.2.2+dfsg-4 | Debian Med Packaging Team | ||
h | h | gwyddion | F | R | Scanning Probe Microscopy visualization and analysis tool | v2.59-1 | Debian Med Packaging Team | ||
h | h | h5sparse | F | R | Scipy sparse matrix in HDF5 | v0.1.0-5 | Debian Med Packaging Team | ||
h | h | harmonypy | F | R | is a data integration algorithm | v0.0.5-2 | Debian Med Packaging Team | ||
h | h | harvest-tools | F | R | archiving and postprocessing for reference-compressed genomic multi-alignments | v1.3-7 | Debian Med Packaging Team | ||
h | h | hdf5 | F | R | v1.10.7+repack-4 | Gilles Filippini | |||
h | h | hdmf | F | R | Hierarchical Data Modeling Framework | v3.1.1-2 | Debian Med Packaging Team | ||
h | h | heudiconv | F | R | DICOM converter with support for structure heuristics | v0.10.0-1 | Debian Med Packaging Team | ||
h | h | hhsuite | F | R | sensitive protein sequence searching based on HMM-HMM alignment | v3.3.0+ds-6 | Debian Med Packaging Team | ||
h | h | hinge | F | R | long read genome assembler based on hinging | v0.5.0-7 | Debian Med Packaging Team | ||
h | h | hisat2 | F | R | graph-based alignment of short nucleotide reads to many genomes | v2.2.1-3 | Debian Med Packaging Team | ||
h | h | hmmer | F | R | profile hidden Markov models for protein sequence analysis | v3.3.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | hnswlib | F | R | v0.5.2-1 | Debian Med Packaging Team | |||
h | h | hopscotch-map | F | R | C++ fast hash map and hash set using hopscotch hashing | v2.3.0-2 | Debian Med Packaging Team | ||
h | h | htscodecs | F | R | v1.1.1-3 | Debian Med Packaging Team | |||
h | h | htseq | F | R | Python3 high-throughput genome sequencing read analysis utilities | v0.13.5-1 | Debian Med Packaging Team | ||
h | h | htsjdk | F | R | v2.24.1+dfsg-1 | Debian Med Packaging Team | |||
h | h | htslib | F | R | v1.13+ds-2 | Debian Med Packaging Team | |||
h | h | hunspell-en-med | F | R | English medical dictionary for hunspell | v0.0.20140410-4 | Debian Med Packaging Team | ||
h | h | hyphy | F | R | v2.5.33+dfsg-1 | Debian Med Packaging Team | |||
h | h | icb-utils | F | R | Java library of utilities to manage files and compute statistics | v2.0.1+git20161002.afee1d9-5 | Debian Med Packaging Team | ||
h | h | idseq-bench | F | R | Benchmark generator for the IDseq Portal | v0.0~git20200902.8241a9a-1 | Debian Med Packaging Team | ||
h | h | igor | F | R | infers V(D)J recombination processes from sequencing data | v1.4.0+dfsg-3 | Debian Med Packaging Team | ||
h | h | igraph | F | R | v0.8.5+ds1-1 | Debian Med Packaging Team | |||
h | h | igv | F | R | Integrative Genomics Viewer | v2.11.9+dfsg-1 | Debian Med Packaging Team | ||
h | h | illustrate | F | R | cartoonish representations of large biological molecules | v0.0+git20200923.217db48-2 | Debian Med Packaging Team | ||
h | h | imagej | F | R | Image processing program with a focus on microscopy images | v1.53k-2 | Debian Med Packaging Team | ||
h | h | imagemagick | F | R | image manipulation programs -- binaries | v8:6.9.11.60+dfsg-1.3 | ImageMagick Packaging Team | ||
h | h | imview | F | R | Image viewing and analysis application | v1.1.9h-3 | Debian Science Maintainers | ||
h | h | indexed-gzip | F | R | v1.6.4-1 | Debian Med Packaging Team | |||
h | h | insighttoolkit4 | F | R | v4.13.3withdata-dfsg1-4.1 | Debian Med Packaging Team | |||
h | h | insighttoolkit5 | F | R | v5.2.1-2 | Debian Med Packaging Team | |||
h | h | insilicoseq | F | R | sequencing simulator producing realistic Illumina reads | v1.5.4-1 | Debian Med Packaging Team | ||
h | h | intake | F | R | lightweight package for finding and investigating data | v0.6.4-2 | Debian Med Packaging Team | ||
h | h | invesalius | F | R | 3D medical imaging reconstruction software | v3.1.99995-1 | Debian Med Packaging Team | ||
h | h | itksnap | F | R | semi-automatic segmentation of structures in 3D images | v3.6.0-5 | NeuroDebian Team | ||
h | h | iva | F | R | iterative virus sequence assembler | v1.0.11+ds-1 | Debian Med Packaging Team | ||
h | h | ivar | F | R | functions broadly useful for viral amplicon-based sequencing | v1.3.1+dfsg-4 | Debian Med Packaging Team | ||
h | h | jabref | F | R | graphical frontend to manage BibTeX and BibLaTeX databases | v3.8.2+ds-16 | Debian Java Maintainers | ||
h | h | jaligner | F | R | Smith-Waterman algorithm with Gotoh's improvement | v1.0+dfsg-8 | Debian Med Packaging Team | ||
h | h | jalview | F | R | multiple alignment editor | v2.11.1.4+dfsg-2 | Debian Java Maintainers | ||
h | h | jellyfish | F | R | count k-mers in DNA sequences | v2.3.0-12 | Debian Med Packaging Team | ||
h | h | jellyfish1 | F | R | count k-mers in DNA sequences | v1.1.11-6 | Debian Med Packaging Team | ||
h | h | jheatchart | F | R | v0.6-1.1 | Debian Med Packaging Team | |||
h | h | jmodeltest | F | R | HPC selection of models of nucleotide substitution | v2.1.10+dfsg-11 | Debian Med Packaging Team | ||
h | h | jmol | F | R | Molecular Viewer | v14.32.3+dfsg1-1 | Debichem Team | ||
h | h | joypy | F | R | ridgeline-/joyplots plotting routine | v0.2.2-3 | Debian Python Team | ||
h | h | kalign | F | R | Global and progressive multiple sequence alignment | v1:3.31-1 | Debian Med Packaging Team | ||
h | h | kallisto | F | R | near-optimal RNA-Seq quantification | v0.46.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | kaptive | F | R | obtain information about K and O types for Klebsiella genome assemblies | v0.7.3-4 | Debian Med Packaging Team | ||
h | h | kbibtex | F | R | BibTeX editor for KDE | v0.9.90-1 | Debian Science Maintainers | ||
h | h | khmer | F | R | in-memory DNA sequence kmer counting, filtering & graph traversal | v2.1.2+dfsg-10 | Debian Med Packaging Team | ||
h | h | kineticstools | F | R | detection of DNA modifications | v0.6.1+git20210811.276ca9c+dfsg-1 | Debian Med Packaging Team | ||
h | h | king | F | R | interactive system for three-dimensional vector graphics | v2.23.161103+dfsg2-1 | Debian Med Packaging Team | ||
h | h | king-probe | F | R | Evaluate and visualize protein interatomic packing | v2.18-2 | Debian Med Packaging Team | ||
h | h | kissplice | F | R | Detection of various kinds of polymorphisms in RNA-seq data | v2.5.4+dfsg-1 | Debian Med Packaging Team | ||
h | h | kleborate | F | R | tool to screen Klebsiella genome assemblies | v2.1.0-2 | Debian Med Packaging Team | ||
h | h | klustakwik | F | R | automatic sorting of the samples (spikes) into clusters | v3.0.2+ds-2 | Debian Med Packaging Team | ||
h | h | kma | F | R | mapping genomic sequences to raw reads directly against redundant databases | v1.3.23-2 | Debian Med Packaging Team | ||
h | h | kmc | F | R | count kmers in genomic sequences | v3.1.1+dfsg-4 | Debian Med Packaging Team | ||
h | h | kraken | F | R | assigning taxonomic labels to short DNA sequences | v1.1.1-3 | Debian Med Packaging Team | ||
h | h | kraken2 | F | R | taxonomic classification system using exact k-mer matches | v2.1.2-1 | Debian Med Packaging Team | ||
h | h | lamarc | F | R | Likelihood Analysis with Metropolis Algorithm using Random Coalescence | v2.1.10.1+dfsg-6 | Debian Med Packaging Team | ||
h | h | last-align | F | R | genome-scale comparison of biological sequences | v1256-1 | Debian Med Packaging Team | ||
h | h | lastz | F | R | pairwise aligning DNA sequences | v1.04.15-2 | Debian Med Packaging Team | ||
h | h | lefse | F | R | determine features of organisms, clades, taxonomic units, genes | v1.1.2-1 | Debian Med Packaging Team | ||
h | h | libace-perl | F | R | Object-Oriented Access to ACEDB Databases | v1.92-11 | Debian Med Packaging Team | ||
h | h | libargs | F | R | simple header-only C++ argument parser library | v6.2.6-1 | Debian Med Packaging Team | ||
h | h | libatomic-queue | F | R | v0.0+git20211209.7db4cea-1 | Debian Med Packaging Team | |||
h | h | libbio-asn1-entrezgene-perl | F | R | parser for NCBI Entrez Gene and NCBI Sequence records | v1.730-2 | Debian Perl Group | ||
h | h | libbiod | F | R | v0.2.3+git20191120.b8eecef-2 | Debian Med Packaging Team | |||
h | h | libbio-db-biofetch-perl | F | R | Database object interface to BioFetch retrieval | v1.7.3-4 | Debian Med Packaging Team | ||
h | h | libbio-db-embl-perl | F | R | Database object interface for EMBL entry retrieval | v1.7.4-4 | Debian Med Packaging Team | ||
h | h | libbio-db-ncbihelper-perl | F | R | collection of routines useful for queries to NCBI databases | v1.7.6-4 | Debian Med Packaging Team | ||
h | h | libbioparser-dev | F | R | library for parsing several formats in bioinformatics | v3.0.15-2 | Debian Med Packaging Team | ||
h | h | libbiosoup-dev | F | R | C++ header-only support library for bioinformatics tools | v0.10.0-4 | Debian Med Packaging Team | ||
h | h | libbio-tools-phylo-paml-perl | F | R | Bioperl interface to the PAML suite | v1.7.3-3 | Debian Perl Group | ||
h | h | libbio-tools-run-alignment-clustalw-perl | F | R | Bioperl interface to Clustal W | v1.7.4-2 | Debian Perl Group | ||
h | h | libbio-tools-run-alignment-tcoffee-perl | F | R | Bioperl interface to T-Coffee | v1.7.4-2 | Debian Perl Group | ||
h | h | libbio-variation-perl | F | R | BioPerl variation-related functionality | v1.7.5-3 | Debian Med Packaging Team | ||
h | h | libbpp-core | F | R | v2.4.1-7 | Debian Med Packaging Team | |||
h | h | libbpp-phyl | F | R | v2.4.1-6 | Debian Med Packaging Team | |||
h | h | libbpp-phyl-omics | F | R | v2.4.1-3 | Debian Med Packaging Team | |||
h | h | libbpp-popgen | F | R | v2.4.1-6 | Debian Med Packaging Team | |||
h | h | libbpp-qt | F | R | v2.4.1-6 | Debian Med Packaging Team | |||
h | h | libbpp-raa | F | R | v2.4.1-6 | Debian Med Packaging Team | |||
h | h | libbpp-seq | F | R | v2.4.1-7 | Debian Med Packaging Team | |||
h | h | libbpp-seq-omics | F | R | v2.4.1-7 | Debian Med Packaging Team | |||
h | h | libcereal | F | R | v1.3.0+dfsg-2 | Debian Med Packaging Team | |||
h | h | libchipcard | F | R | v5.1.6-1 | Micha Lenk | |||
h | h | libcifpp | F | R | v1.0.1-5 | Debian Med Packaging Team | |||
h | h | libctapimkt | F | R | v1.0.5~rc1-9 | Debian Med Packaging Team | |||
h | h | libdeflate | F | R | v1.8-1 | Debian Med Packaging Team | |||
h | h | libdisorder | F | R | v0.0.2+git20130809.8062ee1-4 | Debian Med Packaging Team | |||
h | h | libedlib | F | R | v1.2.7-3 | Debian Med Packaging Team | |||
h | h | libfastahack | F | R | v1.0.0+dfsg-9 | Debian Med Packaging Team | |||
h | h | libgclib | F | R | v0.12.7+ds-4 | Debian Med Packaging Team | |||
h | h | libgdf | F | R | v0.1.3-11 | Debian Med Packaging Team | |||
h | h | libgenome | F | R | v1.3.11+svn20110227.4616-4 | Debian Med Packaging Team | |||
h | h | libgff | F | R | GFF/GTF parsing from cufflinks as a library | v2.0.0-2 | Debian Med Packaging Team | ||
h | h | libgoby-java | F | R | v3.3.1+dfsg2-7 | Debian Med Packaging Team | |||
h | h | libgo-perl | F | R | perl modules for GO and other OBO ontologies | v0.15-9 | Debian Med Packaging Team | ||
h | h | libgzstream | F | R | v1.5+git20171107.9a20658-1 | Debian Med Packaging Team | |||
h | h | libhac-java | F | R | hierarchical agglomerative clustering | v0.20110510+git20110510.8b2a326-1 | Debian Med Packaging Team | ||
h | h | libhmsbeagle | F | R | v3.1.2+dfsg-12 | Debian Med Packaging Team | |||
h | h | libhpptools | F | R | various C++ header tools | v1.1.1-4 | Debian Med Packaging Team | ||
h | h | libics | F | R | v1.6.5-2 | Debian Med Packaging Team | |||
h | h | libjbzip2-java | F | R | bzip2 compression/decompression library | v0.9.1-7 | Debian Java Maintainers | ||
h | h | libjloda-java | F | R | Java library of data structures and algorithms for bioinformatics | v2.1-1 | Debian Med Packaging Team | ||
h | h | libjung-free-java | F | R | Java Universal Network/Graph Framework | v2.1.1-1 | Debian Med Packaging Team | ||
h | h | libla4j-java | F | R | Linear Algebra for Java | v0.6.0-3 | Debian Med Packaging Team | ||
h | h | liblemon | F | R | v1.3.1+dfsg-5 | Debian Med Packaging Team | |||
h | h | libmaus2 | F | R | v2.0.806+ds-1 | Debian Med Packaging Team | |||
h | h | libminc | F | R | v2.4.03-4 | Debian Med Packaging Team | |||
h | h | libmurmurhash | F | R | v1.5-3 | Debian Med Packaging Team | |||
h | h | libncl | F | R | v2.1.21+git20210811.b1213a7-1 | Debian Med Packaging Team | |||
h | h | libpal-java | F | R | Phylogenetic Analysis Library | v1.5.1+dfsg-7 | Debian Med Packaging Team | ||
h | h | libpdb-redo | F | R | v1.0.2-3 | Debian Med Packaging Team | |||
h | h | libpsortb | F | R | v1.0+dfsg-5 | Debian Med Packaging Team | |||
h | h | libqes | F | R | v0.2.8+ds-1 | Debian Med Packaging Team | |||
h | h | libquazip | F | R | v0.9.1-2 | Debian Med Packaging Team | |||
h | h | librandom123 | F | R | v1.14.0+dfsg-1 | Debian Med Packaging Team | |||
h | h | librcsb-core-wrapper | F | R | v1.005-10 | Debian Med Packaging Team | |||
h | h | librdp-taxonomy-tree-java | F | R | taxonomy tree library from Ribosomal Database Project (RDP) | v1.2.0-5 | Debian Med Packaging Team | ||
h | h | libsbml | F | R | v5.19.0+dfsg-1 | Debian Med Packaging Team | |||
h | h | libsecrecy | F | R | v0.0.5+dfsg-2 | Debian Med Packaging Team | |||
h | h | libseqlib | F | R | v1.2.0+dfsg-8 | Debian Med Packaging Team | |||
h | h | libsmithwaterman | F | R | v0.0+git20160702.2610e25-12 | Debian Med Packaging Team | |||
h | h | libssw | F | R | v1.1-13 | Debian Med Packaging Team | |||
h | h | libstatgen | F | R | v1.0.15-4 | Debian Med Packaging Team | |||
h | h | libstreamvbyte | F | R | v0.4.1-3 | Debian Med Packaging Team | |||
h | h | libtabixpp | F | R | v1.1.0-6 | Debian Med Packaging Team | |||
h | h | libtecla | F | R | v1.6.3-3 | Debian Med Packaging Team | |||
h | h | libtfbs-perl | F | R | scanning DNA sequence with a position weight matrix | v0.7.1+ds-1 | Debian Med Packaging Team | ||
h | h | libthread-pool | F | R | C++ header-only thread pool library (devel) | v3.0.2-1 | Debian Med Packaging Team | ||
h | h | libvbz-hdf-plugin | F | R | v1.0.1-2 | Debian Med Packaging Team | |||
h | h | libvcflib | F | R | v1.0.2+dfsg-4 | Debian Med Packaging Team | |||
h | h | libvigraimpex | F | R | v1.11.1+dfsg-8 | Debian Science Maintainers | |||
h | h | libxdf | F | R | v0.99.8+dfsg-1 | Debian Med Packaging Team | |||
h | h | libzeep | F | R | v5.1.4-1 | Debian Med Packaging Team | |||
h | h | libzstd | F | R | v1.4.8+dfsg-3 | Debian Med Packaging Team | |||
h | h | lighter | F | R | fast and memory-efficient sequencing error corrector | v1.1.2-6 | Debian Med Packaging Team | ||
h | h | logol | F | R | Pattern matching tool using Logol language | v1.7.9+dfsg-1 | Debian Med Packaging Team | ||
h | h | lumpy-sv | F | R | general probabilistic framework for structural variant discovery | v0.3.1+dfsg-6 | Debian Med Packaging Team | ||
h | h | macromoleculebuilder | F | R | v3.5+dfsg-4 | Debichem Team | |||
h | h | macs | F | R | Model-based Analysis of ChIP-Seq on short reads sequencers | v2.2.7.1-5 | Debian Med Packaging Team | ||
h | h | macsyfinder | F | R | detection of macromolecular systems in protein datasets | v2.0~rc4-1 | Debian Med Packaging Team | ||
h | h | maffilter | F | R | process genome alignment in the Multiple Alignment Format | v1.3.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | mafft | F | R | Multiple alignment program for amino acid or nucleotide sequences | v7.490-1 | Debian Med Packaging Team | ||
h | h | mapdamage | F | R | tracking and quantifying damage patterns in ancient DNA sequences | v2.2.1+dfsg-2 | Debian Med Packaging Team | ||
h | h | mapsembler2 | F | R | bioinformatics targeted assembly software | v2.2.4+dfsg1-4 | Debian Med Packaging Team | ||
h | h | mash | F | R | fast genome and metagenome distance estimation using MinHash | v2.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | massxpert | F | R | polymer chemistry modelling and mass spectrometry data simulation (runtime) | v6.0.2-1 | Debichem Team | ||
h | h | mauve-aligner | F | R | multiple genome alignment | v2.4.0+4736-4 | Debian Med Packaging Team | ||
h | h | mcaller | F | R | find methylation in nanopore reads | v1.0.3+git20210624.b415090-1 | Debian Med Packaging Team | ||
h | h | medicalterms | F | R | v20160103-6 | Debian Med Packaging Team | |||
h | h | megahit | F | R | ultra-fast and memory-efficient meta-genome assembler | v1.2.9-3 | Debian Med Packaging Team | ||
h | h | metaphlan2 | F | R | Metagenomic Phylogenetic Analysis | v3.0.13-1 | Debian Med Packaging Team | ||
h | h | metastudent-data | F | R | predictor of Gene Ontology terms from protein sequence - data files | v2.0.1-7 | Debian Med Packaging Team | ||
h | h | mia | F | R | v2.4.7-8 | Debian Med Packaging Team | |||
h | h | mialmpick | F | R | Tools for landmark picking in 3D volume data sets | v0.2.15-2 | Debian Med Packaging Team | ||
h | h | microbiomeutil | F | R | Microbiome Analysis Utilities | v20101212+dfsg1-4 | Debian Med Packaging Team | ||
h | h | migrate | F | R | v0.13.0-3 | Debian OpenStack | |||
h | h | milib | F | R | library for Next Generation Sequencing (NGS) data processing | v1.13-1 | Debian Med Packaging Team | ||
h | h | minc-tools | F | R | MNI medical image format tools | v2.3.00+dfsg-7 | Debian Med Packaging Team | ||
h | h | mindthegap | F | R | performs detection and assembly of DNA insertion variants in NGS read datasets | v2.2.3-4 | Debian Med Packaging Team | ||
h | h | minia | F | R | short-read biological sequence assembler | v3.2.6-1 | Debian Med Packaging Team | ||
h | h | miniasm | F | R | ultrafast de novo assembler for long noisy DNA sequencing reads | v0.3+dfsg-3 | Debian Med Packaging Team | ||
h | h | minimac4 | F | R | Fast Imputation Based on State Space Reduction HMM | v1.0.2-4 | Debian Med Packaging Team | ||
h | h | minimap | F | R | tool for approximate mapping of long biosequences such as DNA reads | v0.2-6 | Debian Med Packaging Team | ||
h | h | minimap2 | F | R | versatile pairwise aligner for genomic and spliced nucleotide sequences | v2.22+dfsg-3 | Debian Med Packaging Team | ||
h | h | mipe | F | R | Tools to store PCR-derived data | v1.1-9 | Debian Med Packaging Team | ||
h | h | mirtop | F | R | annotate miRNAs with a standard mirna/isomir naming | v0.4.24-1 | Debian Med Packaging Team | ||
h | h | mmseqs2 | F | R | ultra fast and sensitive protein search and clustering | v13-45111+ds-2 | Debian Med Packaging Team | ||
h | h | mosdepth | F | R | BAM/CRAM depth calculation biological sequencing | v0.3.2+ds-1 | Debian Med Packaging Team | ||
h | h | mothur | F | R | sequence analysis suite for research on microbiota | v1.46.1-1 | Debian Med Packaging Team | ||
h | h | mrbayes | F | R | Bayesian Inference of Phylogeny | v3.2.7a-5 | Debian Med Packaging Team | ||
h | h | mrc | F | R | resource compiler to store data in ELF object files | v1.3.4-1 | Debian Med Packaging Team | ||
h | h | mricron | F | R | magnetic resonance image conversion, viewing and analysis | v1.2.20211006+dfsg-1 | Debian Med Packaging Team | ||
h | h | mrtrix3 | F | R | diffusion-weighted MRI white matter tractography | v3.0.3-2 | Debian Med Packaging Team | ||
h | h | msxpertsuite | F | R | mass spectrometry software suite - metapackage | v5.8.9-1 | Debichem Team | ||
h | h | multiqc | F | R | output integration for RNA sequencing across tools and samples | v1.11+dfsg-1 | Debian Med Packaging Team | ||
h | h | mummer | F | R | Efficient sequence alignment of full genomes | v3.23+dfsg-7 | Debian Med Packaging Team | ||
h | h | murasaki | F | R | homology detection tool across multiple large genomes | v1.68.6-13 | Debian Med Packaging Team | ||
h | h | mypy | F | R | optional static typing for Python | v0.930-1 | Debian Python Team | ||
h | h | nanofilt | F | R | filtering and trimming of long read sequencing data | v2.6.0-4 | Debian Med Packaging Team | ||
h | h | nanolyse | F | R | remove lambda phage reads from a fastq file | v1.2.0-2 | Debian Med Packaging Team | ||
h | h | nanook | F | R | pre- and post-alignment analysis of nanopore sequencing data | v1.33+dfsg-4 | Debian Med Packaging Team | ||
h | h | nanopolish | F | R | consensus caller for nanopore sequencing data | v0.13.3-2 | Debian Med Packaging Team | ||
h | h | nanosv | F | R | structural variant caller for nanopore data | v1.2.4+git20190409.c1ae30c-6 | Debian Med Packaging Team | ||
h | h | ncbi-acc-download | F | R | download genome files from NCBI by accession | v0.2.8-1 | Debian Med Packaging Team | ||
h | h | ncbi-blast+ | F | R | next generation suite of BLAST sequence search tools | v2.12.0+ds-2 | Debian Med Packaging Team | ||
h | h | ncbi-entrez-direct | F | R | NCBI Entrez utilities on the command line | v14.6.20210224+dfsg-5 | Debian Med Packaging Team | ||
h | h | ncbi-vdb | F | R | v2.11.2+dfsg-4 | Debian Med Packaging Team | |||
h | h | neobio | F | R | computes alignments of amino acid and nucleotide sequences | v0.0.20030929-6 | Debian Med Packaging Team | ||
h | h | ngmlr | F | R | CoNvex Gap-cost alignMents for Long Reads | v0.2.7+git20210816.a2a31fb+dfsg-2 | Debian Med Packaging Team | ||
h | h | ngs-sdk | F | R | v2.11.2-1 | Debian Med Packaging Team | |||
h | h | nibabel | F | R | v3.2.1-3 | Debian Med Packaging Team | |||
h | h | nifticlib | F | R | v3.0.1-8 | Debian Med Packaging Team | |||
h | h | nim-hts | F | R | v0.3.19+ds-1 | Debian Med Packaging Team | |||
h | h | nim-kexpr | F | R | kexpr math expressions for nim | v0.0.2-3 | Debian Med Packaging Team | ||
h | h | nim-lapper | F | R | simple, fast interval searches for nim | v0.1.7-4 | Debian Med Packaging Team | ||
h | h | nipy | F | R | v0.5.0-2 | Debian Med Packaging Team | |||
h | h | nipype | F | R | v1.7.0-1 | Debian Med Packaging Team | |||
h | h | nitime | F | R | v0.9-2 | Debian Med Packaging Team | |||
h | h | ntcard | F | R | Streaming algorithm to estimate cardinality in genomics datasets | v1.2.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | nthash | F | R | Methods to evaluate runtime and uniformity tests for hashing methods | v2.2.0-2 | Debian Med Packaging Team | ||
h | h | nxtrim | F | R | Optimized trimming of Illumina mate pair reads | v0.4.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | obitools | F | R | programs to analyze NGS data in a DNA metabarcoding context | v1.2.13+dfsg-4 | Debian Med Packaging Team | ||
h | h | octave | F | R | GNU Octave language for numerical computations | v6.2.0-1 | Debian Octave Group | ||
h | h | odil | F | R | C++11 library for the DICOM standard (application) | v0.12.1-4 | Debian Med Packaging Team | ||
h | h | odin | F | R | develop, simulate and run magnetic resonance sequences | v2.0.5-1 | Debian Med Packaging Team | ||
h | h | ont-fast5-api | F | R | v4.0.0+dfsg-1 | Debian Med Packaging Team | |||
h | h | opencfu | F | R | count cell colonies (CFUs) on agar plates by processing digital pictures | v4.0.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | opencv | F | R | v4.5.4+dfsg-9 | Debian Science Maintainers | |||
h | h | openmm | F | R | v7.6.0+dfsg-1 | Debichem Team | |||
h | h | openms | F | R | package for LC/MS data management and analysis | v2.6.0+cleaned1-3 | Debichem Team | ||
h | h | opensurgsim | F | R | v0.7.0-11 | Debian Med Packaging Team | |||
h | h | optimir | F | R | Integrating genetic variations in miRNA alignment | v1.1-1 | Debian Med Packaging Team | ||
h | h | orthanc | F | R | Lightweight, RESTful DICOM server for medical imaging | v1.9.7+dfsg-5 | Debian Med Packaging Team | ||
h | h | orthanc-dicomweb | F | R | Plugin to extend Orthanc with support of WADO and DICOMweb | v1.7+dfsg-1 | Debian Med Packaging Team | ||
h | h | orthanc-gdcm | F | R | DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k) | v1.4-2 | Debian Med Packaging Team | ||
h | h | orthanc-imagej | F | R | ImageJ plugin to import images from Orthanc | v1.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | orthanc-mysql | F | R | Plugins to use MySQL or MariaDB as a database back-end to Orthanc | v4.3-2 | Debian Med Packaging Team | ||
h | h | orthanc-postgresql | F | R | Plugins to use PostgreSQL as a database back-end to Orthanc | v4.0-4 | Debian Med Packaging Team | ||
h | h | orthanc-python | F | R | Develop plugins for Orthanc using the Python programming language | v3.4+ds-1 | Debian Med Packaging Team | ||
h | h | orthanc-webviewer | F | R | Web viewer of medical images for Orthanc | v2.7-6 | Debian Med Packaging Team | ||
h | h | orthanc-wsi | F | R | Whole-slide imaging support for Orthanc (digital pathology) | v1.1-1 | Debian Med Packaging Team | ||
h | h | oscar | F | R | Open Source CPAP Analysis Reporter (OSCAR) | v1.3.0-1 | Debian Med Packaging Team | ||
h | h | pairtools | F | R | v0.3.0-3.2 | Debian Med Packaging Team | |||
h | h | paleomix | F | R | pipelines and tools for the processing of ancient and modern HTS data | v1.3.6-1 | Debian Med Packaging Team | ||
h | h | paraclu | F | R | Parametric clustering of genomic and transcriptomic features | v10-1 | Debian Med Packaging Team | ||
h | h | parafly | F | R | parallel command processing using OpenMP | v0.1.0-3 | Debian Med Packaging Team | ||
h | h | parallel | F | R | build and execute command lines from standard input in parallel | v20210822+ds-2 | Debian Med Packaging Team | ||
h | h | parallel-fastq-dump | F | R | parallel fastq-dump wrapper | v0.6.7-1 | Debian Med Packaging Team | ||
h | h | parasail | F | R | Aligner based on libparasail3 | v2.4.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | paraview | F | R | Parallel Visualization Application | v5.10.0~rc1-1 | Debian Science Maintainers | ||
h | h | parsinsert | F | R | Parsimonious Insertion of unclassified sequences into phylogenetic trees | v1.04-10 | Debian Med Packaging Team | ||
h | h | parsnp | F | R | rapid core genome multi-alignment | v1.5.6+dfsg-1 | Debian Med Packaging Team | ||
h | h | paryfor | F | R | Parallel_for implementation based on atomic queues | v0.1-4 | Debian Med Packaging Team | ||
h | h | patman | F | R | rapid alignment of short sequences to large databases | v1.2.2+dfsg-8 | Debian Med Packaging Team | ||
h | h | patsy | F | R | v0.5.2-2 | Debian Med Packaging Team | |||
h | h | pbcopper | F | R | v1.9.3+dfsg-2 | Debian Med Packaging Team | |||
h | h | pbdagcon | F | R | sequence consensus using directed acyclic graphs | v0.3+git20180411.c14c422+dfsg-5 | Debian Med Packaging Team | ||
h | h | pbseqlib | F | R | v5.3.5+dfsg-2 | Debian Med Packaging Team | |||
h | h | pbsuite | F | R | software for Pacific Biosciences sequencing data | v15.8.24+dfsg-7 | Debian Med Packaging Team | ||
h | h | peptidebuilder | F | R | generate atomic oligopeptide 3D structure from sequence | v1.1.0-3 | Debian Med Packaging Team | ||
perm | F | R | efficient mapping of short reads with periodic spaced seeds | v0.4.0-8 | Debian Med Packaging Team | ||||
h | h | phast | F | R | phylogenetic analysis with space/time models | v1.6+dfsg-3 | Debian Med Packaging Team | ||
h | h | phybin | F | R | binning/clustering newick trees by topology | v0.3-5 | Debian Med Packaging Team | ||
h | h | phylonium | F | R | Fast and Accurate Estimation of Evolutionary Distances | v1.6-1 | Debian Med Packaging Team | ||
h | h | phyml | F | R | Phylogenetic estimation using Maximum Likelihood | v3:3.3.20211021-1 | Debian Med Packaging Team | ||
h | h | physamp | F | R | sample sequence alignment corresponding to phylogeny | v1.1.0-3 | Debian Med Packaging Team | ||
h | h | phyutility | F | R | simple analyses or modifications on both phylogenetic trees and data matrices | v2.7.3+dfsg-4 | Debian Med Packaging Team | ||
h | h | picard-tools | F | R | Command line tools to manipulate SAM and BAM files | v2.26.6+dfsg-2 | Debian Med Packaging Team | ||
h | h | pigx-rnaseq | F | R | pipeline for checkpointed and distributed RNA-seq analyses | v0.0.19-2 | Debian Med Packaging Team | ||
h | h | pilercr | F | R | software for finding CRISPR repeats | v1.06+dfsg-5 | Debian Med Packaging Team | ||
h | h | pilon | F | R | automated genome assembly improvement and variant detection tool | v1.24-1 | Debian Med Packaging Team | ||
h | h | pinfish | F | R | Collection of tools to annotate genomes using long read transcriptomics data | v0.1.0+ds-3 | Debian Med Packaging Team | ||
h | h | pique | F | R | software pipeline for performing genome wide association studies | v1.0-3 | Debian Med Packaging Team | ||
h | h | pirs | F | R | Profile based Illumina pair-end Reads Simulator | v2.0.2+dfsg-10 | Debian Med Packaging Team | ||
h | h | pixelmed | F | R | v20210920+dfsg-1 | Debian Med Packaging Team | |||
h | h | pixelmed-codec | F | R | v20200328-4 | Debian Med Packaging Team | |||
h | h | pizzly | F | R | Identifies gene fusions in RNA sequencing data | v0.37.3+ds-6 | Debian Med Packaging Team | ||
h | h | placnet | F | R | Plasmid Constellation Network project | v1.04-1 | Debian Med Packaging Team | ||
h | h | plasmidid | F | R | mapping-based, assembly-assisted plasmid identification tool | v1.6.5+dfsg-1 | Debian Med Packaging Team | ||
h | h | plasmidomics | F | R | draw plasmids and vector maps with PostScript graphics export | v0.2.0-10 | Debian Med Packaging Team | ||
h | h | plasmidseeker | F | R | identification of known plasmids from whole-genome sequencing reads | v1.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | plast | F | R | Parallel Local Sequence Alignment Search Tool | v2.3.2+dfsg-7 | Debian Med Packaging Team | ||
h | h | plastimatch | F | R | medical image reconstruction and registration | v1.9.3+dfsg.1-2 | Debian Med Packaging Team | ||
h | h | plink | F | R | whole-genome association analysis toolset | v1.07+dfsg-4 | Debian Med Packaging Team | ||
h | h | plink1.9 | F | R | whole-genome association analysis toolset | v1.90~b6.24-210606-1 | Debian Med Packaging Team | ||
h | h | plink2 | F | R | whole-genome association analysis toolset | v2.00~a3-211011+dfsg-1 | Debian Med Packaging Team | ||
h | h | plip | F | R | fully automated protein-ligand interaction profiler | v2.2.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | populations | F | R | population genetic software | v1.2.33+svn0120106+dfsg-6 | Debian Med Packaging Team | ||
h | h | porechop | F | R | adapter trimmer for Oxford Nanopore reads | v0.2.4+dfsg-3 | Debian Med Packaging Team | ||
h | h | pplacer | F | R | phylogenetic placement and downstream analysis | v1.1~alpha19-6 | Debian Med Packaging Team | ||
h | h | praat | F | R | program for speech analysis and synthesis | v6.2.04-1 | Debian Med Packaging Team | ||
h | h | presto | F | R | toolkit for processing B and T cell sequences | v0.7.0-1 | Debian Med Packaging Team | ||
h | h | prime-phylo | F | R | bayesian estimation of gene trees taking the species tree into account | v1.0.11-10 | Debian Med Packaging Team | ||
h | h | primer3 | F | R | tool to design flanking oligo nucleotides for DNA amplification | v2.5.0-1 | Debian Med Packaging Team | ||
h | h | probcons | F | R | PROBabilistic CONSistency-based multiple sequence alignment | v1.12-14 | Debian Med Packaging Team | ||
h | h | prodigal | F | R | Microbial (bacterial and archaeal) gene finding program | v1:2.6.3-5 | Debian Med Packaging Team | ||
gone | h | h | profphd | F | R | secondary structure and solvent accessibility predictor | v1.0.42-3 | Debian Med Packaging Team | |
h | h | proftmb | F | R | per-residue prediction of bacterial transmembrane beta barrels | v1.1.12-10 | Debian Med Packaging Team | ||
h | h | prokka | F | R | rapid annotation of prokaryotic genomes | v1.14.6+dfsg-4 | Debian Med Packaging Team | ||
h | h | proteinortho | F | R | Detection of (Co-)orthologs in large-scale protein analysis | v6.0.31+dfsg-3 | Debian Med Packaging Team | ||
h | h | prottest | F | R | selection of best-fit models of protein evolution | v3.4.2+dfsg-7 | Debian Med Packaging Team | ||
h | h | psignifit | F | R | Fitting and testing hypotheses about psychometric functions | v2.5.6-8 | Debian Med Packaging Team | ||
h | h | psychopy | F | R | environment for creating psychology stimuli in Python | v2021.2.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | pullseq | F | R | Extract sequence from a fasta or fastq | v1.0.2-2 | Debian Med Packaging Team | ||
h | h | pycoqc | F | R | computes metrics and generates Interactive QC plots | v2.5.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | pydicom | F | R | v2.2.2-1 | Debian Med Packaging Team | |||
h | h | pyensembl | F | R | installs data from the Ensembl genome database | v1.9.4+ds-1 | Debian Med Packaging Team | ||
h | h | pyfai | F | R | Fast Azimuthal Integration scripts | v0.20.0+dfsg1-4.1 | Debian Science Maintainers | ||
h | h | pymol | F | R | Molecular Graphics System | v2.5.0+dfsg-1 | Debichem Team | ||
h | h | pynn | F | R | simulator-independent specification of neuronal network models | v0.10.0-1 | Debian Med Packaging Team | ||
h | h | pynwb | F | R | Python library for working with Neurodata in the NWB format | v1.2.1-2 | Debian Med Packaging Team | ||
h | h | pyode | F | R | v1.2.0.dev15-4 | Debian Med Packaging Team | |||
h | h | pyranges | F | R | 2D representation of genomic intervals and their annotations | v0.0.111+ds-1 | Debian Med Packaging Team | ||
h | h | pyrle | F | R | run length arithmetic in Python | v0.0.33-3 | Debian Python Team | ||
h | h | pysurfer | F | R | visualize Freesurfer's data in Python3 | v0.11.0-2 | Debian Med Packaging Team | ||
h | h | python3-typed-ast | F | R | AST with PEP 484 type comments support | v1.4.3-1 | Debian Python Team | ||
h | h | python-alignlib | F | R | edit and Hamming distances for biological sequences | v0.1.1+dfsg-2 | Debian Med Packaging Team | ||
h | h | python-anndata | F | R | annotated gene by sample numpy matrix | v0.7.8-2 | Debian Med Packaging Team | ||
h | h | python-avro | F | R | Apache Avro serialization system (Python 3 library) | v1.10.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | python-bcbio-gff | F | R | Python3 library to read and write Generic Feature Format | v0.6.8-1 | Debian Med Packaging Team | ||
h | h | python-bel-resources | F | R | Python3 utilities for BEL resource files | v0.0.3-3 | Debian Med Packaging Team | ||
h | h | python-bids-validator | F | R | validator for the Brain Imaging Data Structure (BIDS) datasets | v1.8.2-1 | Debian Med Packaging Team | ||
h | h | python-biom-format | F | R | v2.1.10-3 | Debian Med Packaging Team | |||
h | h | python-biopython | F | R | v1.79+dfsg-1 | Debian Med Packaging Team | |||
h | h | python-bx | F | R | library to manage genomic data and its alignment | v0.8.9-1 | Debian Med Packaging Team | ||
gone | h | h | python-bz2file | F | R | Python3 library for reading and writing bzip2-compressed files | v0.98-3 | Debian Med Packaging Team | |
h | h | python-cigar | F | R | manipulate SAM cigar strings | v0.1.3-2 | Debian Med Packaging Team | ||
h | h | python-ciso8601 | F | R | fast ISO8601 date time parser for Python written in C | v2.2.0-1 | Debian Med Packaging Team | ||
h | h | python-cobra | F | R | v0.22.1-1 | Debian Med Packaging Team | |||
h | h | python-cogent | F | R | v2021.10.12a1+dfsg-1 | Debian Med Packaging Team | |||
h | h | python-colormap | F | R | ease manipulation of matplotlib colormaps and color codecs (Python 3) | v1.0.4-3 | Debian Python Team | ||
h | h | python-colormath | F | R | Abstracts common color math operations (Python 3 version) | v3.0.0-1.1 | Debian Med Packaging Team | ||
h | h | python-cooler | F | R | v0.8.11-1 | Debian Med Packaging Team | |||
h | h | python-csb | F | R | v1.2.5+dfsg-7 | Debian Med Packaging Team | |||
h | h | python-cutadapt | F | R | v3.5-1 | Debian Med Packaging Team | |||
h | h | python-datacache | F | R | helpers for transparently downloading datasets | v0.4.7-2 | Debian Med Packaging Team | ||
h | h | python-deeptools | F | R | platform for exploring biological deep-sequencing data | v3.5.1-1 | Debian Med Packaging Team | ||
h | h | python-dendropy | F | R | v4.5.2-1 | Debian Med Packaging Team | |||
h | h | python-depinfo | F | R | v1.7.0-1 | Debian Med Packaging Team | |||
h | h | python-dicompylercore | F | R | core radiation therapy modules for DICOM / DICOM RT used by dicompyler | v0.5.5-3 | Debian Med Packaging Team | ||
h | h | python-dnaio | F | R | v0.6.0-2 | Debian Med Packaging Team | |||
h | h | python-duckpy | F | R | simple Python library for searching on DuckDuckGo | v3.2.0-3 | Debian Python Team | ||
h | h | python-easydev | F | R | common utilities to ease the development of Python packages (Python 3) | v0.12.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | python-epimodels | F | R | simple interface to simulate mathematical epidemic models in Python3 | v0.3.20-1 | Debian Med Packaging Team | ||
h | h | python-ete3 | F | R | Python Environment for (phylogenetic) Tree Exploration - Python 3.X | v3.1.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | python-geneimpacts | F | R | wraps command line tools to assess variants in gene sequences | v0.3.7-4 | Debian Med Packaging Team | ||
h | h | python-gtfparse | F | R | parser for gene transfer format (aka GFF2) | v1.2.1+ds-2 | Debian Med Packaging Team | ||
h | h | python-hdmedians | F | R | high-dimensional medians in Python3 | v0.14.2-4 | Debian Python Team | ||
h | h | python-hl7 | F | R | Python3 library for parsing HL7 messages | v0.4.2-1 | Debian Med Packaging Team | ||
h | h | python-leidenalg | F | R | v0.8.8-1 | Debian Med Packaging Team | |||
h | h | python-loompy | F | R | access loom formatted files for bioinformatics | v3.0.6+dfsg-5 | Debian Med Packaging Team | ||
h | h | python-lzstring | F | R | LZ-based compression algorithm for Python (Python 3 version) | v1.0.4-1.1 | Debian Med Packaging Team | ||
h | h | python-matplotlib-venn | F | R | Python 3 plotting area-proportional two- and three-way Venn diagrams | v0.11.6-2 | Debian Med Packaging Team | ||
h | h | python-mne | F | R | Python modules for MEG and EEG data analysis | v0.23.4+dfsg-1 | Debian Med Packaging Team | ||
h | h | python-multisplitby | F | R | Python3 module to create iterables split on arbitrary separators | v0.0.1-4 | Debian Med Packaging Team | ||
h | h | python-nanoget | F | R | v1.16.1-1 | Debian Med Packaging Team | |||
h | h | python-nanomath | F | R | simple math function for other Oxford Nanopore processing scripts | v1.2.1+ds-1 | Debian Med Packaging Team | ||
h | h | python-ncls | F | R | v0.0.63+ds-1 | Debian Med Packaging Team | |||
h | h | python-pairix | F | R | v0.3.7-5 | Debian Med Packaging Team | |||
h | h | python-parasail | F | R | Python3 bindings for the parasail C library | v1.2.4-1 | Debian Med Packaging Team | ||
h | h | python-pauvre | F | R | QC and genome browser plotting Oxford Nanopore and PacBio long reads | v0.2.3-1 | Debian Med Packaging Team | ||
h | h | python-pbcore | F | R | v2.1.2+dfsg-1 | Debian Med Packaging Team | |||
h | h | python-pipdeptree | F | R | v2.2.0-2 | Debian Med Packaging Team | |||
h | h | python-pyani | F | R | Python3 module for average nucleotide identity analyses | v0.2.11-1 | Debian Med Packaging Team | ||
h | h | python-pybedtools | F | R | v0.8.2-1 | Debian Med Packaging Team | |||
h | h | python-pycosat | F | R | v0.6.3+dfsg-2 | Debian Med Packaging Team | |||
h | h | python-pyfaidx | F | R | v0.6.2-1 | Debian Med Packaging Team | |||
h | h | python-pyflow | F | R | lightweight parallel task engine for Python | v1.1.20-3 | Debian Med Packaging Team | ||
h | h | python-pynndescent | F | R | nearest neighbor descent for approximate nearest neighbors | v0.5.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | python-pypubsub | F | R | Python 3 publish-subcribe library | v4.0.3-5 | Debian Med Packaging Team | ||
h | h | python-pysam | F | R | v0.17.0+ds-2 | Debian Med Packaging Team | |||
h | h | python-pyspoa | F | R | v0.0.8-2 | Debian Med Packaging Team | |||
h | h | python-pyvcf | F | R | v0.6.8+git20170215.476169c-8 | Debian Med Packaging Team | |||
h | h | python-questplus | F | R | QUEST+ implementation in Python3 | v2019.4-4 | Debian Med Packaging Team | ||
h | h | python-rdflib-jsonld | F | R | rdflib extension adding JSON-LD parser and serializer in Python 3 | v0.6.1-1 | Debian Python Team | ||
h | h | python-ruffus | F | R | v2.8.4-4 | Debian Med Packaging Team | |||
h | h | python-scitrack | F | R | Python3 library to track scientific data | v2021.5.3-1 | Debian Med Packaging Team | ||
h | h | python-screed | F | R | short nucleotide read sequence utils in Python 3 | v1.0.5-4 | Debian Med Packaging Team | ||
contrib | h | h | python-seqcluster | F | R | v1.2.8+ds-1 | Debian Med Packaging Team | ||
h | h | python-sinfo | F | R | print different version information for loaded modules | v0.3.1-2 | Debian Med Packaging Team | ||
h | h | python-skbio | F | R | v0.5.6-6 | Debian Med Packaging Team | |||
h | h | python-spectra | F | R | Easy color scales and color conversion for Python (Python 3 version) | v0.0.11-3 | Debian Med Packaging Team | ||
gone | h | h | python-sqlsoup | F | R | one step database access tool for Python3, built on the SQLAlchemy ORM | v0.9.1-5 | Debian Med Packaging Team | |
h | h | python-sqt | F | R | v0.8.0-5 | Debian Med Packaging Team | |||
h | h | python-stdlib-list | F | R | List of Python Standard Libraries (2.6-7, 3.2-9) | v0.8.0-4 | Debian Med Packaging Team | ||
h | h | python-streamz | F | R | build pipelines to manage continuous streams of data | v0.6.3-1 | Debian Med Packaging Team | ||
h | h | python-stubserver | F | R | mock tester of external web dependencies for Python | v1.1-2 | Debian Med Packaging Team | ||
h | h | python-tornado | F | R | v6.1.0-3 | Debian Python Team | |||
h | h | python-treetime | F | R | inference of time stamped phylogenies and ancestral reconstruction (Python 3) | v0.8.4-1 | Debian Med Packaging Team | ||
h | h | python-wdlparse | F | R | Workflow Description Language (WDL) parser for Python | v0.1.0-2 | Debian Med Packaging Team | ||
h | h | python-wordcloud | F | R | little word cloud generator in Python | v1.8.1+dfsg-2 | Debian Med Packaging Team | ||
h | h | python-xopen | F | R | Python3 module to open compressed files transparently | v1.2.1-3 | Debian Python Team | ||
h | h | pytorch | F | R | v1.8.1-2 | Debian Science Maintainers | |||
h | h | pyxid | F | R | interface for Cedrus XID and StimTracker devices | v1.0-5 | Debian Med Packaging Team | ||
h | h | pyxnat | F | R | Interface to access neuroimaging data on XNAT servers | v1.4-2 | Debian Med Packaging Team | ||
h | h | q2-alignment | F | R | QIIME 2 plugin for generating and manipulating alignments | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2cli | F | R | Click-based command line interface for QIIME 2 | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-cutadapt | F | R | QIIME 2 plugin to work with adapters in sequence data | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-dada2 | F | R | QIIME 2 plugin to work with adapters in sequence data | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-demux | F | R | QIIME 2 plugin for demultiplexing of sequence reads | v2021.8.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | q2-diversity-lib | F | R | QIIME2 plugin to expose diversity metrics/measures as actions | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-feature-classifier | F | R | QIIME 2 plugin supporting taxonomic classification | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-feature-table | F | R | QIIME 2 plugin supporting operations on feature tables | v2021.8.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | q2-fragment-insertion | F | R | QIIME 2 plugin for fragment insertion | v2021.8.0-3 | Debian Med Packaging Team | ||
h | h | q2-metadata | F | R | QIIME 2 plugin for working with and visualizing Metadata | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-phylogeny | F | R | QIIME 2 plugin for phylogeny | v2021.4.0-2 | Debian Med Packaging Team | ||
h | h | q2-quality-control | F | R | QIIME 2 plugin for quality assurance of feature and sequence data | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-quality-filter | F | R | QIIME2 plugin for PHRED-based filtering and trimming | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-sample-classifier | F | R | QIIME 2 plugin for machine learning prediction of sample data | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-taxa | F | R | QIIME 2 plugin for working with feature taxonomy annotations | v2021.8.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | q2templates | F | R | Design template package for QIIME 2 Plugins | v2021.8.0+ds-1 | Debian Med Packaging Team | ||
h | h | q2-types | F | R | QIIME 2 plugin defining types for microbiome analysis | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | qcat | F | R | demultiplexing Oxford Nanopore reads from FASTQ files | v1.1.0-3 | Debian Med Packaging Team | ||
h | h | qcumber | F | R | quality control of genomic sequences | v2.3.0-2 | Debian Med Packaging Team | ||
h | h | qiime | F | R | Quantitative Insights Into Microbial Ecology | v2021.8.0-2 | Debian Med Packaging Team | ||
h | h | quorum | F | R | QUality Optimized Reads of genomic sequences | v1.1.1-6 | Debian Med Packaging Team | ||
h | h | qutemol | F | R | interactive visualization of macromolecules | v0.4.1~cvs20081111-14 | Debichem Team | ||
h | h | racon | F | R | consensus module for raw de novo DNA assembly of long uncorrected reads | v1.5.0-2 | Debian Med Packaging Team | ||
h | h | radiant | F | R | explore hierarchical metagenomic data with zoomable pie charts | v2.8+dfsg-1 | Debian Med Packaging Team | ||
h | h | ragout | F | R | Reference-Assisted Genome Ordering UTility | v2.3-3 | Debian Med Packaging Team | ||
h | h | rambo-k | F | R | Read Assignment Method Based On K-mers | v1.21+dfsg-4 | Debian Med Packaging Team | ||
h | h | rampler | F | R | module for sampling genomic sequences | v2.0.0-2 | Debian Med Packaging Team | ||
h | h | rapmap | F | R | rapid sensitive and accurate DNA read mapping via quasi-mapping | v0.15.0+dfsg-2 | Debian Med Packaging Team | ||
h | h | raster3d | F | R | tools for generating images of proteins or other molecules | v3.0-7-2 | Debian Med Packaging Team | ||
h | h | raxml | F | R | Randomized Axelerated Maximum Likelihood of phylogenetic trees | v8.2.12+dfsg-7 | Debian Med Packaging Team | ||
h | h | r-base | F | R | GNU R statistical computation and graphics system | v4.1.2-1 | Dirk Eddelbuettel | ||
h | h | r-bioc-affy | F | R | BioConductor methods for Affymetrix Oligonucleotide Arrays | v1.72.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-affyio | F | R | BioConductor tools for parsing Affymetrix data files | v1.64.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-altcdfenvs | F | R | BioConductor alternative CDF environments | v1:2.56.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-annotate | F | R | BioConductor annotation for microarrays | v1.72.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-annotationdbi | F | R | GNU R Annotation Database Interface for BioConductor | v1.56.2-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-annotationhub | F | R | GNU R client to access AnnotationHub resources | v3.2.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-aroma.light | F | R | BioConductor methods normalization and visualization of microarray data | v3.24.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-beachmat | F | R | I/O for several formats storing matrix data | v2.10.0+ds-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biobase | F | R | base functions for Bioconductor | v2.54.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biocgenerics | F | R | generic functions for Bioconductor | v0.40.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biocneighbors | F | R | Nearest Neighbor Detection for Bioconductor Packages | v1.12.0+ds-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biocsingular | F | R | Singular Value Decomposition for Bioconductor Packages | v1.10.0+ds-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biomart | F | R | GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene) | v2.50.1+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biomformat | F | R | GNU R interface package for the BIOM file format | v1.22.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biostrings | F | R | GNU R string objects representing biological sequences | v2.62.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-biovizbase | F | R | GNU R basic graphic utilities for visualization of genomic data | v1.42.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-bitseq | F | R | transcript expression inference and analysis for RNA-seq data | v1.38.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-bsgenome | F | R | BioConductor infrastructure for Biostrings-based genome data packages | v1.62.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-cner | F | R | CNE Detection and Visualization | v1.30.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-complexheatmap | F | R | make complex heatmaps using GNU R | v2.10.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-ctc | F | R | Cluster and Tree Conversion | v1.68.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-cummerbund | F | R | tool for analysis of Cufflinks RNA-Seq output | v2.36.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-dada2 | F | R | sample inference from amplicon sequencing data | v1.22.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-deseq | F | R | GNU R differential gene expression analysis | v1.39.0-7 | Debian R Packages Maintainers | ||
h | h | r-bioc-deseq2 | F | R | R package for RNA-Seq Differential Expression Analysis | v1.34.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-dnacopy | F | R | R package: DNA copy number data analysis | v1.68.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-ebseq | F | R | R package for RNA-Seq Differential Expression Analysis | v1.34.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-edger | F | R | Empirical analysis of digital gene expression data in R | v3.36.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-ensembldb | F | R | GNU R utilities to create and use an Ensembl based annotation database | v2.18.2+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-experimenthub | F | R | BioConductor client to access ExperimentHub resources | v2.2.0+ds-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-genefilter | F | R | methods for filtering genes from microarray experiments | v1.76.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-geneplotter | F | R | R package of functions for plotting genomic data | v1.72.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-genomeinfodb | F | R | BioConductor utilities for manipulating chromosome identifiers | v1.30.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-genomicalignments | F | R | BioConductor representation and manipulation of short genomic alignments | v1.30.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-genomicfeatures | F | R | GNU R tools for making and manipulating transcript centric annotations | v1.46.1+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-genomicfiles | F | R | Distributed computing by file or by range | v1.30.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-genomicranges | F | R | BioConductor representation and manipulation of genomic intervals | v1.46.1+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-geoquery | F | R | Get data from NCBI Gene Expression Omnibus (GEO) | v2.62.1+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-go.db | F | R | annotation maps describing the entire Gene Ontology | v3.14.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-graph | F | R | handle graph data structures for BioConductor | v1.72.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-grohmm | F | R | GRO-seq Analysis Pipeline | v1.28.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-gviz | F | R | Plotting data and annotation information along genomic coordinates | v1.38.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-hilbertvis | F | R | GNU R package to visualise long vector data | v1.52.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-htsfilter | F | R | GNU R filter replicated high-throughput transcriptome sequencing data | v1.34.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-hypergraph | F | R | BioConductor hypergraph data structures | v1.66.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-impute | F | R | Imputation for microarray data | v1.68.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-iranges | F | R | GNU R low-level containers for storing sets of integer ranges | v2.28.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-limma | F | R | linear models for microarray data | v3.50.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-makecdfenv | F | R | BioConductor CDF Environment Maker | v1.70.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-mergeomics | F | R | Integrative network analysis of omics data | v1.22.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-metagenomeseq | F | R | GNU R statistical analysis for sparse high-throughput sequencing | v1.36.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-mofa | F | R | Multi-Omics Factor Analysis (MOFA) | v1.6.1+dfsg-5 | Debian R Packages Maintainers | ||
h | h | r-bioc-multiassayexperiment | F | R | Software for integrating multi-omics experiments in BioConductor | v1.20.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-multtest | F | R | Bioconductor resampling-based multiple hypothesis testing | v2.50.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-mutationalpatterns | F | R | GNU R comprehensive genome-wide analysis of mutational processes | v3.4.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-nanostringqcpro | F | R | processing and QA for NanoString mRNA expression data | v1.26.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-org.hs.eg.db | F | R | genome-wide annotation for Human | v3.14.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-pcamethods | F | R | BioConductor collection of PCA methods | v1.86.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-phyloseq | F | R | GNU R handling and analysis of high-throughput microbiome census data | v1.38.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-preprocesscore | F | R | BioConductor collection of pre-processing functions | v1.56.0+ds-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-purecn | F | R | copy number calling and SNV classification using targeted short read sequencing | v2.0.1+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-pwmenrich | F | R | PWM enrichment analysis | v4.30.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-qusage | F | R | qusage: Quantitative Set Analysis for Gene Expression | v2.28.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-qvalue | F | R | GNU R package for Q-value estimation for FDR control | v2.26.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-rbgl | F | R | R interface to the graph algorithms contained in the BOOST library | v1.70.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-rgsepd | F | R | GNU R gene set enrichment / projection displays | v1.26.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-rsamtools | F | R | GNU R binary alignment (BAM), variant call (BCF), or tabix file import | v2.10.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-rsubread | F | R | Subread Sequence Alignment and Counting for R | v2.8.1-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-rtracklayer | F | R | GNU R interface to genome browsers and their annotation tracks | v1.54.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-s4vectors | F | R | BioConductor S4 implementation of vectors and lists | v0.32.3-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-savr | F | R | GNU R parse and analyze Illumina SAV files | v1.32.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-scater | F | R | Single-Cell Analysis Toolkit for Gene Expression Data in R | v1.22.0+ds-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-shortread | F | R | GNU R classes and methods for high-throughput short-read sequencing data | v1.52.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-singlecellexperiment | F | R | S4 Classes for Single Cell Data | v1.16.0+ds-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-snpstats | F | R | BioConductor SnpMatrix and XSnpMatrix classes and methods | v1.44.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-tcgabiolinks | F | R | GNU R/Bioconductor package for integrative analysis with GDC data | v2.22.2+dfsg-2 | Debian R Packages Maintainers | ||
h | h | r-bioc-tfbstools | F | R | GNU R Transcription Factor Binding Site (TFBS) Analysis | v1.32.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-titancna | F | R | Subclonal copy number and LOH prediction from whole genome sequencing | v1.32.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-tximport | F | R | transcript-level estimates for biological sequencing | v1.22.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-variantannotation | F | R | BioConductor annotation of genetic variants | v1.40.0-1 | Debian R Packages Maintainers | ||
h | h | r-bioc-xvector | F | R | BioConductor representation and manpulation of external sequences | v0.34.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-ade4 | F | R | GNU R analysis of ecological data | v1.7-18-1 | Debian R Packages Maintainers | ||
h | h | r-cran-adegenet | F | R | GNU R exploratory analysis of genetic and genomic data | v2.1.5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-alakazam | F | R | Immunoglobulin Clonal Lineage and Diversity Analysis | v1.2.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-ape | F | R | GNU R package for Analyses of Phylogenetics and Evolution | v5.6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-beeswarm | F | R | bee swarm plot, an alternative to stripchart | v0.4.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-bio3d | F | R | GNU R package for biological structure analysis | v2.4-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-corrplot | F | R | Visualization of a Correlation Matrix | v0.92-1 | Debian R Packages Maintainers | ||
h | h | r-cran-crayon | F | R | GNU R colored terminal output | v1.4.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-dosefinding | F | R | Planning and Analyzing Dose Finding experiments | v1.0-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-dt | F | R | GNU R wrapper of the JavaScript library 'DataTables' | v0.17+dfsg-3 | Debian R Packages Maintainers | ||
h | h | r-cran-epi | F | R | GNU R epidemiological analysis | v2.44-1 | Debian R Packages Maintainers | ||
h | h | r-cran-epiestim | F | R | GNU R estimate time varying reproduction numbers from rpidemic curves | v2.2-4+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-epir | F | R | GNU R Functions for analysing epidemiological data | v2.0.40-1 | Debian R Packages Maintainers | ||
h | h | r-cran-fastcluster | F | R | Fast hierarchical clustering routines for GNU R | v1.2.3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-fitdistrplus | F | R | support fit of parametric distribution | v1.1-6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-forecast | F | R | GNU R forecasting functions for time series and linear models | v8.15-1 | Debian R Packages Maintainers | ||
h | h | r-cran-future.apply | F | R | apply function to elements in parallel using futures | v1.8.1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-future.batchtools | F | R | Future API for Parallel and Distributed Processing | v0.10.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-genetics | F | R | GNU R package for population genetics | v1.3.8.1.3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-gprofiler | F | R | Interface to the 'g:Profiler' Toolkit | v0.7.0-2 | Debian R Packages Maintainers | ||
h | h | r-cran-haplo.stats | F | R | GNU R package for haplotype analysis | v1.8.7-1 | Debian R Packages Maintainers | ||
h | h | r-cran-hms | F | R | GNU R pretty time of day | v1.1.1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-incidence | F | R | GNU R compute, handle, plot and model incidence of dated events | v1.7.3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-memoise | F | R | Memoise functions | v2.0.1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-metap | F | R | Meta-Analysis of Significance Values | v1.7-1 | Debian R Packages Maintainers | ||
h | h | r-cran-minerva | F | R | Maximal Information-Based Nonparametric Exploration | v1.5.10-1 | Debian R Packages Maintainers | ||
h | h | r-cran-msm | F | R | GNU R Multi-state Markov and hidden Markov models in continuous time | v1.6.9-1 | Debian R Packages Maintainers | ||
h | h | r-cran-optimalcutpoints | F | R | Computing Optimal Cutpoints in Diagnostic Tests | v1.1-5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-pcapp | F | R | Robust PCA by Projection Pursuit | v1.9-74-1 | Debian R Packages Maintainers | ||
h | h | r-cran-phangorn | F | R | GNU R package for phylogenetic analysis | v2.8.1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-phytools | F | R | GNU R phylogenetic tools for comparative biology | v0.7-90-1 | Debian R Packages Maintainers | ||
h | h | r-cran-proc | F | R | Display and Analyze ROC Curves | v1.18.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-pscbs | F | R | R package: Analysis of Parent-Specific DNA Copy Numbers | v0.66.0-2 | Debian R Packages Maintainers | ||
h | h | r-cran-psych | F | R | GNU R procedures for psychological, psychometric, and personality research | v2.1.9-2 | Debian R Packages Maintainers | ||
h | h | r-cran-psychotree | F | R | GNU R recursive partitioning based on psychometric models | v0.15-4-2 | Debian R Packages Maintainers | ||
h | h | r-cran-qqman | F | R | R package for visualizing GWAS results using Q-Q and manhattan plots | v0.1.8+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-qtl | F | R | GNU R package for genetic marker linkage analysis | v1.50-1 | Debian R Packages Maintainers | ||
h | h | r-cran-rotl | F | R | GNU R interface to the 'Open Tree of Life' API | v3.0.12-1 | Debian R Packages Maintainers | ||
h | h | r-cran-rpact | F | R | Confirmatory Adaptive Clinical Trial Design and Analysis | v3.2.0-2 | Debian R Packages Maintainers | ||
gone | h | h | r-cran-rsgcc | F | R | Gini correlation and clustering of gene expression data | v1.0.6-2 | Debian R Packages Maintainers | |
h | h | r-cran-rsvd | F | R | Randomized Singular Value Decomposition | v1.0.5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-rwave | F | R | GNU R time-frequency analysis of 1-D signals | v2.6-0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-sctransform | F | R | Variance Stabilizing Transformations for Single Cell UMI Data | v0.3.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-seqinr | F | R | GNU R biological sequences retrieval and analysis | v4.2-8-1 | Debian R Packages Maintainers | ||
h | h | r-cran-seurat | F | R | Tools for Single Cell Genomics | v4.0.6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-sf | F | R | Simple Features for R | v1.0-5+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-shazam | F | R | Immunoglobulin Somatic Hypermutation Analysis | v1.1.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-sitmo | F | R | GNU R parallel pseudo random number generator 'sitmo' header files | v2.0.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-sjplot | F | R | GNU R data visualization for statistics in social science | v2.8.10-1 | Debian R Packages Maintainers | ||
h | h | r-cran-stringi | F | R | GNU R character string processing facilities | v1.7.6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-surveillance | F | R | GNU R package for the Modeling and Monitoring of Epidemic Phenomena | v1.19.1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-vegan | F | R | Community Ecology Package for R | v2.5-7+dfsg-2 | Debian R Packages Maintainers | ||
h | h | r-cran-venndiagram | F | R | Generate High-Resolution Venn and Euler Plots | v1.7.1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-wgcna | F | R | Weighted Correlation Network Analysis | v1.70-3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-withr | F | R | GNU R package to run code 'With' temporarily modified global state | v2.4.3-2 | Debian R Packages Maintainers | ||
h | h | rdkit | F | R | v202109.2-1 | Debichem Team | |||
h | h | rdp-alignment | F | R | Ribosomal Database Project (RDP) alignment tools package | v1.2.0-7 | Debian Med Packaging Team | ||
h | h | rdp-classifier | F | R | extensible sequence classifier for fungal lsu, bacterial and archaeal 16s | v2.10.2-6 | Debian Med Packaging Team | ||
h | h | rdp-readseq | F | R | Ribosomal Database Project (RDP) sequence reading and writing | v2.0.2-8 | Debian Med Packaging Team | ||
h | h | readerwriterqueue | F | R | single-producer, single-consumer lock-free queue for C++ | v1.0.5-1 | Debian Med Packaging Team | ||
h | h | readucks | F | R | Nanopore read de-multiplexer (read demux -> readux -> readucks, innit) | v0.0.3-3 | Debian Med Packaging Team | ||
h | h | relion | F | R | toolkit for 3D reconstructions in cryo-electron microscopy | v3.1.3-1 | Debian Med Packaging Team | ||
contrib | h | h | relion-cuda | F | R | parallel toolkit for 3D reconstructions in cryo-electron microscopy | v3.1.0-2 | Debian Med Packaging Team | |
h | h | repeatmasker-recon | F | R | finds repeat families from biological sequences | v1.08-7 | Debian Med Packaging Team | ||
h | h | resfinder | F | R | identify acquired antimicrobial resistance genes | v4.1.5-2 | Debian Med Packaging Team | ||
h | h | rna-star | F | R | ultrafast universal RNA-seq aligner | v2.7.9a+dfsg-3 | Debian Med Packaging Team | ||
h | h | roguenarok | F | R | versatile and scalable algorithm for rogue taxon identification | v1.0.1-2 | Debian Med Packaging Team | ||
h | h | r-other-mott-happy | F | R | GNU R package for fine-mapping complex diseases | v2.4-5 | Debian R Packages Maintainers | ||
h | h | routine-update | F | R | routine updater for a Debian source package | v0.0.10 | Debian Med Packaging Team | ||
h | h | rsem | F | R | RNA-Seq by Expectation-Maximization | v1.3.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | rtax | F | R | Classification of sequence reads of 16S ribosomal RNA gene | v0.984-8 | Debian Med Packaging Team | ||
h | h | ruby-bio | F | R | Ruby tools for computational molecular biology | v2.0.3-1 | Debian Ruby Extras Maintainers | ||
h | h | salmid | F | R | rapid Kmer based Salmonella identifier from sequence data | v0.1.23-4 | Debian Med Packaging Team | ||
h | h | salmon | F | R | wicked-fast transcript quantification from RNA-seq data | v1.6.0+ds1-1 | Debian Med Packaging Team | ||
h | h | sambamba | F | R | tools for working with SAM/BAM data | v0.8.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | samblaster | F | R | marks duplicates, extracts discordant/split reads | v0.1.26-3 | Debian Med Packaging Team | ||
h | h | samclip | F | R | filter SAM file for soft and hard clipped alignments | v0.4.0-3 | Debian Med Packaging Team | ||
h | h | samtools | F | R | processing sequence alignments in SAM, BAM and CRAM formats | v1.13-4 | Debian Med Packaging Team | ||
h | h | samtools-legacy | F | R | manipulates nucleotide sequence alignments in BAM or SAM format | v0.1.19+dfsg-4 | Debian Med Packaging Team | ||
h | h | scoary | F | R | pangenome-wide association studies | v1.6.16-3 | Debian Med Packaging Team | ||
h | h | scrappie | F | R | basecaller for Nanopore sequencer | v1.4.2-8 | Debian Med Packaging Team | ||
h | h | seer | F | R | genomic sequence element (kmer) enrichment analysis | v1.1.4-6 | Debian Med Packaging Team | ||
h | h | segemehl | F | R | short read mapping with gaps | v0.3.4-5 | Debian Med Packaging Team | ||
h | h | seirsplus | F | R | Models of SEIRS epidemic dynamics with extensions | v0.1.4+really-1 | Debian Med Packaging Team | ||
h | h | sepp | F | R | phylogeny with ensembles of Hidden Markov Models | v4.5.1+really4.5.1+dfsg-2 | Debian Med Packaging Team | ||
gone | h | h | seqan | F | R | C++ library for the analysis of biological sequences (development) | v1.4.2+dfsg-3 | Debian Med Packaging Team | |
h | h | seqan2 | F | R | v2.4.0+dfsg-14 | Debian Med Packaging Team | |||
h | h | seqan3 | F | R | v3.1.0+ds-1 | Debian Med Packaging Team | |||
h | h | seqkit | F | R | cross-platform and ultrafast toolkit for FASTA/Q file manipulation | v2.0.1+ds-2 | Debian Med Packaging Team | ||
h | h | seqmagick | F | R | imagemagick-like frontend to Biopython SeqIO | v0.8.4-3 | Debian Med Packaging Team | ||
h | h | seqprep | F | R | stripping adaptors and/or merging paired reads of DNA sequences with overlap | v1.3.2-7 | Debian Med Packaging Team | ||
h | h | seqsero | F | R | Salmonella serotyping from genome sequencing data | v1.0.1+dfsg-5 | Debian Med Packaging Team | ||
h | h | seqtools | F | R | v4.44.1+dfsg-7 | Debian Med Packaging Team | |||
h | h | seriation | F | R | finds a suitable linear order for a set of objects | v0.1+git20210125.fc7b8cb-1 | Debian Med Packaging Team | ||
h | h | sga | F | R | de novo genome assembler that uses string graphs | v0.10.15-7 | Debian Med Packaging Team | ||
h | h | shapeit4 | F | R | fast and accurate method for estimation of haplotypes (phasing) | v4.2.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | shasta | F | R | nanopore whole genome assembly (binaries and scripts) | v0.8.0-1 | Debian Med Packaging Team | ||
h | h | shovill | F | R | Assemble bacterial isolate genomes from Illumina paired-end reads | v1.1.0-5 | Debian Med Packaging Team | ||
h | h | sight | F | R | v21.0.0-3 | Debian Med Packaging Team | |||
h | h | sigviewer | F | R | GUI viewer for biosignals such as EEG, EMG, and ECG | v0.6.4-2 | Debian Med Packaging Team | ||
h | h | simde | F | R | Implementations of SIMD instructions for all systems | v0.7.2-5 | Debian Med Packaging Team | ||
h | h | simka | F | R | comparative metagenomics method dedicated to NGS datasets | v1.5.3-5 | Debian Med Packaging Team | ||
h | h | simrisc | F | R | simulation model for breast cancer risk | v14.05.00-3 | Debian Med Packaging Team | ||
h | h | skesa | F | R | strategic Kmer extension for scrupulous assemblies | v2.4.0-3 | Debian Med Packaging Team | ||
h | h | skewer | F | R | post-processing of high-throughput DNA sequence reads | v0.2.2-6 | Debian Med Packaging Team | ||
h | h | smalt | F | R | Sequence Mapping and Alignment Tool | v0.7.6-12 | Debian Med Packaging Team | ||
h | h | smart-open | F | R | utils for streaming large files | v5.2.1-3 | Debian Python Team | ||
h | h | smrtanalysis | F | R | software suite for single molecule, real-time sequencing | v0~20210111 | Debian Med Packaging Team | ||
h | h | snakemake | F | R | pythonic workflow management system | v6.10.0+dfsg1-1 | Debian Med Packaging Team | ||
h | h | snap | F | R | location of genes from DNA sequence with hidden markov model | v2013-11-29-11 | Debian Med Packaging Team | ||
h | h | snap-aligner | F | R | Scalable Nucleotide Alignment Program | v1.0.0+dfsg-3 | Debian Med Packaging Team | ||
h | h | snp-sites | F | R | Binary code for the package snp-sites | v2.5.1-2 | Debian Med Packaging Team | ||
h | h | soapaligner | F | R | aligner of short reads of next generation sequencers | v2.20-5 | Debian Med Packaging Team | ||
h | h | soapdenovo2 | F | R | short-read assembly method to build de novo draft assembly | v242+dfsg-2 | Debian Med Packaging Team | ||
h | h | socket++ | F | R | v1.12.13+git20131030.5d039ba-1 | Debian Med Packaging Team | |||
gone | h | h | sofa-framework | F | R | v1.0~beta4-12 | Debian Med Packaging Team | ||
h | h | sorted-nearest | F | R | Cython helper library for pyranges | v0.0.31+dfsg-1 | Debian Med Packaging Team | ||
h | h | spaced | F | R | alignment-free sequence comparison using spaced words | v1.2.0-201605+dfsg-3 | Debian Med Packaging Team | ||
h | h | spaln | F | R | splicing-aware transcript-alignment to genomic DNA | v2.4.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | spdlog | F | R | v1:1.9.2+ds-0.2 | Debian Med Packaging Team | |||
h | h | sphinxcontrib-autoprogram | F | R | automated documentation of CLI programs for Sphinx (Python 3) | v0.1.7-1 | Debian Med Packaging Team | ||
h | h | spoa | F | R | SIMD partial order alignment tool | v4.0.7+ds-2 | Debian Med Packaging Team | ||
h | h | spread-phy | F | R | analyze and visualize phylogeographic reconstructions | v1.0.7+dfsg-4 | Debian Med Packaging Team | ||
h | h | sra-sdk | F | R | utilities for the NCBI Sequence Read Archive | v2.11.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | srst2 | F | R | Short Read Sequence Typing for Bacterial Pathogens | v0.2.0-9 | Debian Med Packaging Team | ||
h | h | ssake | F | R | genomics application for assembling millions of very short DNA sequences | v4.0.1-1 | Debian Med Packaging Team | ||
h | h | sspace | F | R | scaffolding pre-assembled contigs after extension | v2.1.1+dfsg-6 | Debian Med Packaging Team | ||
h | h | ssshtest | F | R | stupid simple (ba)sh testing | v0.0+git20190416.6f5438a-2 | Debian Med Packaging Team | ||
h | h | stacks | F | R | pipeline for building loci from short-read DNA sequences | v2.60+dfsg-1 | Debian Med Packaging Team | ||
h | h | staden-io-lib | F | R | v1.14.14+dfsg-1 | Debian Med Packaging Team | |||
h | h | stringtie | F | R | assemble short RNAseq reads to transcripts | v2.1.6+ds-1 | Debian Med Packaging Team | ||
h | h | subread | F | R | toolkit for processing next-gen sequencing data | v2.0.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | sumalibs | F | R | v1.0.36-3 | Debian Med Packaging Team | |||
h | h | surpyvor | F | R | modification of VCF files with SURVIVOR | v0.5-2 | Debian Med Packaging Team | ||
h | h | survivor | F | R | tool set for simulating/evaluating SVs | v1.0.7-3 | Debian Med Packaging Team | ||
h | h | svim | F | R | Structural variant caller for long sequencing reads | v2.0.0-2 | Debian Med Packaging Team | ||
h | h | swarm-cluster | F | R | robust and fast clustering method for amplicon-based studies | v3.1.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | swissknife | F | R | Perl API to the UniProt database | v1.80-1 | Debian Med Packaging Team | ||
h | h | tantan | F | R | low complexity and tandem repeat masker for biosequences | v26-1 | Debian Med Packaging Team | ||
h | h | teem | F | R | v1.12.0~20160122-4 | Debian Science Maintainers | |||
h | h | texlive-extra | F | R | v2021.20211217-1 | Debian TeX maintainers | |||
h | h | theseus | F | R | superimpose macromolecules using maximum likelihood | v3.3.0-10 | Debian Med Packaging Team | ||
h | h | tiddit | F | R | structural variant calling | v2.12.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | tifffile | F | R | Read and write image data from and to TIFF files | v20211102-1 | Debian Python Team | ||
h | h | tigr-glimmer | F | R | Gene detection in archea and bacteria | v3.02b-6 | Debian Med Packaging Team | ||
h | h | tipp | F | R | tool for Taxonomic Identification and Phylogenetic Profiling | v1.0+dfsg-2 | Debian Med Packaging Team | ||
h | h | tnseq-transit | F | R | statistical calculations of essentiality of genes or genomic regions | v3.2.3-1 | Debian Med Packaging Team | ||
h | h | toil | F | R | cross-platform workflow engine | v5.5.0-7 | Debian Med Packaging Team | ||
h | h | tombo | F | R | identification of modified nucleotides from raw nanopore sequencing data | v1.5.1-3 | Debian Med Packaging Team | ||
h | h | toolz | F | R | v0.11.2-1 | Debian Python Team | |||
h | h | toppred | F | R | transmembrane topology prediction | v1.10-9 | Debian Med Packaging Team | ||
h | h | tortoize | F | R | Application to calculate ramachandran z-scores | v2.0.1-3 | Debian Med Packaging Team | ||
h | h | transdecoder | F | R | find coding regions within RNA transcript sequences | v5.0.1-5 | Debian Med Packaging Team | ||
h | h | transrate-tools | F | R | helper for transrate | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | tree-puzzle | F | R | Reconstruction of phylogenetic trees by maximum likelihood | v5.3~rc16+dfsg-8 | Debian Med Packaging Team | ||
h | h | treeview | F | R | Java re-implementation of Michael Eisen's TreeView | v1.2.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | trf | F | R | locate and display tandem repeats in DNA sequences | v4.09.1-5 | Debian Med Packaging Team | ||
h | h | trim-galore | F | R | automate quality and adapter trimming for DNA sequencing | v0.6.7-1 | Debian Med Packaging Team | ||
h | h | trinculo | F | R | toolkit to carry out genetic association for multi-category phenotypes | v0.96+dfsg-4 | Debian Med Packaging Team | ||
h | h | trinityrnaseq | F | R | RNA-Seq De novo Assembly | v2.13.2+dfsg-3 | Debian Med Packaging Team | ||
non-free | h | h | trnascan-se | F | R | detection of transfer RNA genes in genomic sequence | v2.0.9+ds-1 | Debian Med Packaging Team | |
h | h | tvc | F | R | genetic variant caller for Ion Torrent sequencing platforms | v5.0.3+git20151221.80e144e+dfsg-4 | Debian Med Packaging Team | ||
h | h | uc-echo | F | R | error correction algorithm designed for short-reads from NGS | v1.12-16 | Debian Med Packaging Team | ||
non-free | h | h | ugene | F | R | integrated bioinformatics toolkit | v40.1+dfsg-1 | Debian Med Packaging Team | |
h | h | umap-learn | F | R | Uniform Manifold Approximation and Projection | v0.4.5+dfsg-2 | Debian Med Packaging Team | ||
h | h | umis | F | R | tools for processing UMI RNA-tag data | v1.0.8-1 | Debian Med Packaging Team | ||
gone | h | h | unanimity | F | R | generate and process accurate consensus nucleotide sequences | v3.3.0+dfsg-2.1 | Debian Med Packaging Team | |
h | h | uncalled | F | R | Utility for Nanopore Current Alignment to Large Expanses of DNA | v2.2+ds-2 | Debian Med Packaging Team | ||
h | h | unicycler | F | R | hybrid assembly pipeline for bacterial genomes | v0.4.8+dfsg-2 | Debian Med Packaging Team | ||
h | h | unifrac | F | R | v0.10.0-3 | Debian Med Packaging Team | |||
h | h | unikmer | F | R | Toolkit for nucleic acid k-mer analysis | v0.18.8-1 | Debian Med Packaging Team | ||
non-free | h | h | varscan | F | R | variant detection in next-generation sequencing data | v2.4.3+dfsg-4 | Debian Med Packaging Team | |
h | h | vcfanno | F | R | annotate a VCF with other VCFs/BEDs/tabixed files | v0.3.3+ds-1 | Debian Med Packaging Team | ||
h | h | vcftools | F | R | Collection of tools to work with VCF files | v0.1.16-3 | Debian Med Packaging Team | ||
non-free | h | h | vdjtools | F | R | framework for post-analysis of B/T cell repertoires | v1.2.1+git20190311-6 | Debian Med Packaging Team | |
h | h | velvetoptimiser | F | R | automatically optimise Velvet do novo assembly parameters | v2.2.6-4 | Debian Med Packaging Team | ||
h | h | vg | F | R | tools for working with genome variation graphs | v1.30.0+ds-1 | Debian Med Packaging Team | ||
h | h | virulencefinder | F | R | identify virulence genes in total or partial sequenced isolates of bacteria | v2.0.4-2 | Debian Med Packaging Team | ||
h | h | vmatch | F | R | large scale sequence analysis software | v2.3.1+dfsg-7 | Debian Med Packaging Team | ||
h | h | vsearch | F | R | tool for processing metagenomic sequences | v2.18.0-1 | Debian Med Packaging Team | ||
h | h | vtk6 | F | R | v6.3.0+dfsg2-8.1 | Debian Science Maintainers | |||
h | h | vtk7 | F | R | Binaries for VTK7 | v7.1.1+dfsg2-10.1 | Debian Science Maintainers | ||
h | h | vtk-dicom | F | R | v0.8.12-4 | Debian Med Packaging Team | |||
h | h | wham-align | F | R | Wisconsin's High-Throughput Alignment Method | v0.1.5-8 | Debian Med Packaging Team | ||
h | h | workrave | F | R | Repetitive Strain Injury prevention tool | v1.10.48-2 | Francois Marier | ||
h | h | wtdbg2 | F | R | de novo sequence assembler for long noisy reads | v2.5-8 | Debian Med Packaging Team | ||
h | h | xdffileio | F | R | v0.3-4 | Debian Med Packaging Team | |||
h | h | xenium | F | R | v0.0.2+ds-6 | Debian Med Packaging Team | |||
h | h | xmedcon | F | R | Medical Image (DICOM, ECAT, ...) conversion tool (GUI) | v0.16.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | xpore | F | R | Nanopore analysis of differential RNA modifications | v2.1-1 | Debian Med Packaging Team | ||
h | h | xxsds-dynamic | F | R | succinct and compressed fully-dynamic data structures library | v1.0~alpha.1+20210426.548c6f7-1 | Debian Med Packaging Team | ||
h | h | yaggo | F | R | generate command line parser using getopt_long | v1.5.10-5 | Debian Med Packaging Team | ||
h | h | yaha | F | R | find split-read mappings on single-end queries | v0.1.83-3 | Debian Med Packaging Team | ||
h | h | yanagiba | F | R | filter low quality Oxford Nanopore reads basecalled with Albacore | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | yanosim | F | R | read simulator nanopore DRS datasets | v0.1-4 | Debian Med Packaging Team |