Packages with last news in 2021 from Debian Tracker.
Click the headers to sort the table.
Last news years Science: 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 Unknowngone | not main | h | h | Debian Tracker | F | R | short description | version in Debian | Debian maintainer |
---|---|---|---|---|---|---|---|---|---|
h | h | 3depict | F | R | visualisation and analysis for single valued point data | v0.0.23-1 | Debian Science Maintainers | ||
h | h | 4ti2 | F | R | mathematical tool suite for problems on linear spaces -- tools | v1.6.9+ds-4 | Debian Science Maintainers | ||
h | h | abinit | F | R | package for electronic structure calculations | v9.6.1-1 | Debichem Team | ||
h | h | abyss | F | R | de novo, parallel, sequence assembler for short reads | v2.3.3-2 | Debian Med Packaging Team | ||
h | h | acedb | F | R | v4.9.39+dfsg.02-7 | Debian Med Packaging Team | |||
h | h | aces3 | F | R | Advanced Concepts in Electronic Structure III | v3.0.8-8 | Debichem Team | ||
h | h | adapterremoval | F | R | rapid adapter trimming, identification, and read merging of gene sequences | v2.3.2-1 | Debian Med Packaging Team | ||
h | h | adios | F | R | v1.13.1-30 | Alastair McKinstry | |||
h | h | adms | F | R | Automatic device model synthesizer for Verilog-AMS | v2.3.7-1 | Debian Science Maintainers | ||
h | h | adolc | F | R | v2.7.2-5 | Debian Science Maintainers | |||
h | h | aevol | F | R | digital genetics model to run Evolution Experiments in silico | v5.0+ds-3 | Debian Med Packaging Team | ||
h | h | agda | F | R | dependently typed functional programming language | v2.6.1-1 | Debian Haskell Group | ||
h | h | alberta | F | R | v3.0.3-1 | Debian Science Maintainers | |||
h | h | alfa | F | R | Automated Line Fitting Algorithm | v2.1-1 | Debian Astro Team | ||
h | h | alglib | F | R | v3.17.0-3 | Debian Science Maintainers | |||
h | h | allelecount | F | R | NGS copy number algorithms | v4.3.0-1.1 | Debian Med Packaging Team | ||
h | h | alt-ergo | F | R | Automatic theorem prover dedicated to program verification | v2.0.0-8 | Debian OCaml Maintainers | ||
h | h | altree | F | R | program to perform phylogeny-based association and localization analysis | v1.3.2-1 | Debian Med Packaging Team | ||
h | h | ampliconnoise | F | R | removal of noise from 454 sequenced PCR amplicons | v1.29-10 | Debian Med Packaging Team | ||
h | h | andi | F | R | Efficient Estimation of Evolutionary Distances | v0.14-2 | Debian Med Packaging Team | ||
h | h | anfo | F | R | Short Read Aligner/Mapper from MPG | v0.98-9 | Debian Med Packaging Team | ||
h | h | aoflagger | F | R | Find RFI in radio astronomical observations | v3.1.0-2 | Debian Astro Team | ||
h | h | apache-opennlp | F | R | v1.9.4-1 | Debian Science Maintainers | |||
h | h | apertium | F | R | Shallow-transfer machine translation engine | v3.7.2-2 | Debian Science Maintainers | ||
h | h | apertium-anaphora | F | R | Anaphora resolution module for Apertium | v1.0.2-1 | Debian Science Maintainers | ||
h | h | apertium-apy | F | R | Apertium APY service | v0.11.7-2 | Debian Science Maintainers | ||
gone | h | h | apertium-arg | F | R | Apertium single language data for Aragonese | v0.1.2~r65494-2 | Debian Science Maintainers | |
h | h | apertium-arg-cat | F | R | Apertium translation data for the Aragonese-Catalan pair | v0.2.0-2 | Debian Science Maintainers | ||
gone | h | h | apertium-bel | F | R | Apertium single language data for Belarusian | v0.1.0~r81357-2 | Debian Science Maintainers | |
h | h | apertium-br-fr | F | R | Apertium linguistic data to translate between Breton and French | v0.5.1-1 | Debian Science Maintainers | ||
gone | h | h | apertium-cat | F | R | Apertium single language data for Catalan | v2.6.0-1 | Debian Science Maintainers | |
h | h | apertium-cat-ita | F | R | Apertium translation data for the Catalan-Italian pair | v0.2.1-3 | Debian Science Maintainers | ||
h | h | apertium-cat-srd | F | R | Apertium translation data for the Catalan-Sardinian pair | v1.1.0-1 | Debian Science Maintainers | ||
gone | h | h | apertium-crh | F | R | Apertium single language data for Crimean Tatar | v0.2.0~r83161-2 | Debian Science Maintainers | |
h | h | apertium-crh-tur | F | R | Apertium translation data for the Crimean Tatar-Turkish pair | v0.3.0-1 | Debian Science Maintainers | ||
h | h | apertium-cy-en | F | R | Apertium translation data for the Welsh-English pair | v0.1.1~r57554-8 | Debian Science Maintainers | ||
gone | h | h | apertium-dan | F | R | Apertium single language data for Danish | v0.5.0~r67099-2 | Debian Science Maintainers | |
h | h | apertium-eng-cat | F | R | Apertium translation data for the English-Catalan pair | v1.0.1-4 | Debian Science Maintainers | ||
h | h | apertium-eo-ca | F | R | Apertium translation data for the Esperanto-Catalan pair | v1:0.9.2-1 | Debian Science Maintainers | ||
h | h | apertium-eo-fr | F | R | Apertium translation data for the Esperanto-French pair | v0.9.1-1 | Debian Science Maintainers | ||
h | h | apertium-es-gl | F | R | Apertium translation data for the Spanish-Galician pair | v1.0.9-2 | Debian Science Maintainers | ||
gone | h | h | apertium-fra | F | R | Apertium single language data for French | v1.5.0-1 | Debian Science Maintainers | |
h | h | apertium-fra-frp | F | R | Apertium translation data for the French-Arpitan pair | v1.0.0-2 | Debian Science Maintainers | ||
h | h | apertium-get | F | R | Helper for Apertium and Giellatekno languages and pairs | v1.0.0-2 | Debian Science Maintainers | ||
gone | h | h | apertium-hbs | F | R | Apertium single language data for Serbo-Croatian | v0.5.0~r68212-3 | Debian Science Maintainers | |
h | h | apertium-hbs-eng | F | R | Apertium translation data for the Serbo-Croatian - English pair | v0.5.1-1 | Debian Science Maintainers | ||
h | h | apertium-hbs-slv | F | R | Apertium translation data for the Serbo-Croatian-Slovenian pair | v0.5.1-1 | Debian Science Maintainers | ||
h | h | apertium-hin | F | R | Apertium single language data for Hindi | v0.1.0~r59158-2.1 | Debian Science Maintainers | ||
h | h | apertium-isl | F | R | Apertium single language data for Icelandic | v0.1.0~r65494-2.1 | Debian Science Maintainers | ||
h | h | apertium-ita | F | R | Apertium single language data for Italian | v0.10.0~r82237-2.1 | Debian Science Maintainers | ||
gone | h | h | apertium-kaz | F | R | Apertium single language data for Kazakh | v0.1.0~r61338-2 | Debian Science Maintainers | |
h | h | apertium-kaz-tat | F | R | Apertium translation data for the Kazakh-Tatar pair | v0.2.1-1 | Debian Science Maintainers | ||
h | h | apertium-lex-tools | F | R | Constraint-based lexical selection module | v0.2.7-1 | Debian Science Maintainers | ||
h | h | apertium-mlt-ara | F | R | Apertium translation data for the Maltese-Arabic pair | v0.2.0~r62623-2.1 | Debian Science Maintainers | ||
gone | h | h | apertium-nno | F | R | Apertium single language data for Norwegian Nynorsk | v0.9.0~r69513-3 | Debian Science Maintainers | |
gone | h | h | apertium-nob | F | R | Apertium single language data for Norwegian Bokmål | v0.9.0~r69513-2 | Debian Science Maintainers | |
gone | h | h | apertium-oci | F | R | Apertium single language data for Occitan | v0.1.0-1 | Debian Science Maintainers | |
gone | h | h | apertium-pol | F | R | Apertium single language data for Polish | v0.1.1-1 | Debian Science Maintainers | |
h | h | apertium-recursive | F | R | Apertium recursive structural transfer module | v1.0.1-1 | Debian Science Maintainers | ||
gone | h | h | apertium-rus | F | R | Apertium single language data for Russian | v0.2.0~r82706-1 | Debian Science Maintainers | |
h | h | apertium-rus-ukr | F | R | Apertium translation data for the Russian-Ukrainian pair | v0.2.1-2 | Debian Science Maintainers | ||
h | h | apertium-separable | F | R | Reordering separable/discontiguous multiwords | v0.3.6-2 | Debian Science Maintainers | ||
h | h | apertium-sme-nob | F | R | Apertium translation data for the Northern Sami-Norwegian Bokmål pair | v0.6.1+ds.1-2 | Debian Science Maintainers | ||
h | h | apertium-spa | F | R | Apertium single language data for Spanish | v1.1.0~r79716-2.1 | Debian Science Maintainers | ||
h | h | apertium-spa-arg | F | R | Apertium translation data for the Spanish-Aragonese pair | v0.5.0-1 | Debian Science Maintainers | ||
h | h | apertium-spa-cat | F | R | Apertium translation data for the Spanish-Catalan pair | v2.2.0-2 | Debian Science Maintainers | ||
h | h | apertium-spa-ita | F | R | Apertium translation data for the Spanish-Italian pair | v0.2.1-2 | Debian Science Maintainers | ||
gone | h | h | apertium-srd | F | R | Apertium single language data for Sardinian | v1.2.0~r82994-2 | Debian Science Maintainers | |
h | h | apertium-srd-ita | F | R | Apertium translation data for the Sardinian-Italian pair | v1.1.0-1 | Debian Science Maintainers | ||
gone | h | h | apertium-swe | F | R | Apertium single language data for Swedish | v0.7.0~r69513-2 | Debian Science Maintainers | |
h | h | apertium-swe-dan | F | R | Apertium translation data for the Swedish-Danish pair | v0.8.1-2 | Debian Science Maintainers | ||
gone | h | h | apertium-szl | F | R | Apertium single language data for Silesian | v0.1.0-1 | Debian Science Maintainers | |
gone | h | h | apertium-tat | F | R | Apertium single language data for Tatar | v0.1.0~r60887-2 | Debian Science Maintainers | |
gone | h | h | apertium-tur | F | R | Apertium single language data for Turkish | v0.2.0~r83161-2 | Debian Science Maintainers | |
gone | h | h | apertium-ukr | F | R | Apertium single language data for Ukrainian | v0.1.0~r82563-2 | Debian Science Maintainers | |
h | h | apertium-urd | F | R | Apertium single language data for Urdu | v0.1.0~r61311-2.1 | Debian Science Maintainers | ||
h | h | apertium-urd-hin | F | R | Apertium translation data for the Urdu-Hindi pair | v0.1.0~r64379-2.1 | Debian Science Maintainers | ||
h | h | apriltag | F | R | AprilTags Visual Fiducial System | v3.1.7-1 | Debian Science Maintainers | ||
h | h | arachne-pnr | F | R | Place and route tool for iCE40 family FPGAs | v0.1+20190728gitc40fb22-2 | Debian Science Maintainers | ||
non-free | h | h | arb | F | R | phylogenetic sequence analysis suite - main program | v6.0.6-5 | Debian Med Packaging Team | |
h | h | arduino | F | R | AVR development board IDE from Arduino CC | v2:1.8.19+dfsg1-1 | Debian Electronics Team | ||
h | h | arduino-mk | F | R | Program your Arduino from the command line | v1.5.2-2.1 | Debian Science Maintainers | ||
h | h | ariba | F | R | Antibiotic Resistance Identification By Assembly | v2.14.6+ds-3 | Debian Med Packaging Team | ||
h | h | armadillo | F | R | v1:10.7.4+dfsg-1 | Debian Science Maintainers | |||
h | h | artemis | F | R | genome browser and annotation tool | v18.1.0+dfsg-6 | Debian Med Packaging Team | ||
h | h | artha | F | R | Handy off-line thesaurus based on WordNet | v1.0.5-3 | Debian Science Maintainers | ||
h | h | asciitree | F | R | Draw tree structures using (ASCII or Unicode) characters | v0.3.3-3 | Debian Science Maintainers | ||
h | h | asl | F | R | v0.1.7-3 | Debian Science Maintainers | |||
h | h | asmjit | F | R | v0.0~git20201108.4b13f71-1 | Debian Science Maintainers | |||
h | h | assembly-stats | F | R | get assembly statistics from FASTA and FASTQ files | v1.0.1+ds-5 | Debian Med Packaging Team | ||
h | h | assemblytics | F | R | detect and analyze structural variants from a genome assembly | v1.2.1+dfsg-1 | Debian Med Packaging Team | ||
contrib | h | h | astra-toolbox | F | R | v1.8.3-10 | Debian Science Maintainers | ||
h | h | astrometry.net | F | R | Astrometry plate solver | v0.85+dfsg-1 | Debian Astro Team | ||
h | h | astropy | F | R | v5.0-1 | Debian Astro Team | |||
h | h | ataqv | F | R | ATAC-seq QC and visualization | v1.2.1+ds-2 | Debian Med Packaging Team | ||
h | h | atlas | F | R | v3.10.3-12 | Debian Science Maintainers | |||
h | h | atlas-ecmwf | F | R | v0.27.0-1 | Alastair McKinstry | |||
h | h | augur | F | R | pipeline components for real-time virus analysis | v13.0.2-2 | Debian Med Packaging Team | ||
h | h | augustus | F | R | gene prediction in eukaryotic genomes | v3.4.0+dfsg2-3 | Debian Med Packaging Team | ||
h | h | autoclass | F | R | automatic classification or clustering | v3.3.6.dfsg.1-2 | Debian QA Group | ||
h | h | avogadro | F | R | Molecular Graphics and Modelling System | v1.95.1-2 | Debichem Team | ||
h | h | avogadrolibs | F | R | v1.95.1-6 | Debichem Team | |||
h | h | axe-demultiplexer | F | R | Trie-based DNA sequencing read demultiplexer | v0.3.3+dfsg-3 | Debian Med Packaging Team | ||
h | h | bagel | F | R | Computational Chemistry Package | v1.2.2-2 | Debichem Team | ||
h | h | bali-phy | F | R | Bayesian Inference of Alignment and Phylogeny | v3.6.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | ball | F | R | v1.5.0+git20180813.37fc53c-10 | Debian Med Packaging Team | |||
h | h | bamkit | F | R | tools for common BAM file manipulations | v0.0.1+git20170413.ccd079d-3 | Debian Med Packaging Team | ||
h | h | bamtools | F | R | toolkit for manipulating BAM (genome alignment) files | v2.5.1+dfsg-10 | Debian Med Packaging Team | ||
h | h | bandage | F | R | Bioinformatics Application for Navigating De novo Assembly Graphs Easily | v0.8.1-5 | Debian Med Packaging Team | ||
h | h | bart | F | R | tools for computational magnetic resonance imaging | v0.7.00-2 | Debian Med Packaging Team | ||
h | h | bart-view | F | R | viewer for multi-dimensional complex-valued data | v0.1.00-6 | Debian Med Packaging Team | ||
h | h | basix | F | R | v0.0.1~git20210409.b980196-2 | Debian Science Maintainers | |||
h | h | bbmap | F | R | BBTools genomic aligner and other tools for short sequences | v38.94+dfsg-2 | Debian Med Packaging Team | ||
h | h | bcalm | F | R | de Bruijn compaction in low memory | v2.2.3-2 | Debian Med Packaging Team | ||
contrib | h | h | bcbio | F | R | toolkit for analysing high-throughput sequencing data | v1.2.5-1 | Debian Med Packaging Team | |
h | h | bcftools | F | R | genomic variant calling and manipulation of VCF/BCF files | v1.13-1 | Debian Med Packaging Team | ||
h | h | beads | F | R | 2-DE electrophoresis gel image spot detection | v1.1.20-3 | Debian Med Packaging Team | ||
h | h | beagle | F | R | Genotype calling, genotype phasing and imputation of ungenotyped markers | v5.2-210628-2 | Debian Med Packaging Team | ||
h | h | beast2-mcmc | F | R | Bayesian MCMC phylogenetic inference | v2.6.6+dfsg-2 | Debian Med Packaging Team | ||
h | h | beast-mcmc | F | R | Bayesian MCMC phylogenetic inference | v1.10.4+dfsg-3 | Debian Med Packaging Team | ||
h | h | bedops | F | R | high-performance genomic feature operations | v2.4.40+dfsg-1 | Debian Med Packaging Team | ||
h | h | bedtools | F | R | suite of utilities for comparing genomic features | v2.30.0+dfsg-2 | Debian Med Packaging Team | ||
h | h | benchmark | F | R | v1.6.0-2 | Debian Science Maintainers | |||
h | h | berkeley-express | F | R | Streaming quantification for high-throughput sequencing | v1.5.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | biber | F | R | Much-augmented BibTeX replacement for BibLaTeX users | v2.16-2 | Debian TeX maintainers | ||
h | h | bibutils | F | R | interconvert various bibliographic data formats | v7.2-1 | Debian Science Maintainers | ||
h | h | binoculars | F | R | Surface X-ray diffraction 2D detector data reduction | v0.0.10-1 | Debian Science Maintainers | ||
h | h | biobambam2 | F | R | tools for early stage alignment file processing | v2.0.183+ds-1 | Debian Med Packaging Team | ||
h | h | biogenesis | F | R | artificial life program that simulates evolution of organisms | v0.8-3.1 | Miriam Ruiz | ||
h | h | bioperl | F | R | Perl tools for computational molecular biology | v1.7.8-1 | Debian Med Packaging Team | ||
h | h | bioperl-run | F | R | BioPerl wrappers: scripts | v1.7.3-7 | Debian Med Packaging Team | ||
h | h | biosig | F | R | v2.3.3-1 | Debian Med Packaging Team | |||
h | h | bist | F | R | chemical drawing tool | v0.5.2-1.2 | David Paleino | ||
h | h | bitseq | F | R | Bayesian Inference of Transcripts from Sequencing Data | v0.7.5+dfsg-6 | Debian Med Packaging Team | ||
h | h | bitwise | F | R | Interactive bitwise operation in ncurses | v0.43-1 | Ramon Fried | ||
h | h | blasr | F | R | mapping single-molecule sequencing reads | v5.3.5+dfsg-1 | Debian Med Packaging Team | ||
blends | F | R | v0.7.4 | Debian Pure Blend Team | |||||
h | h | blis | F | R | v0.8.1-2 | Debian Science Maintainers | |||
h | h | bmt | F | R | software analysis benchmarking toolkit | v0.6-1.1 | Michael Tautschnig | ||
gone | h | h | boinc-app-seti | F | R | SETI@home application for the BOINC client | v8.00~svn3725-3 | Debian BOINC Maintainers | |
h | h | bolt-lmm | F | R | Efficient large cohorts genome-wide Bayesian mixed-model association testing | v2.3.6+dfsg-1 | Debian Med Packaging Team | ||
h | h | boot | F | R | GNU R package for bootstrapping functions from Davison and Hinkley | v1.3-28-2 | Dirk Eddelbuettel | ||
h | h | bornagain | F | R | Simulate and fit X-ray and neutron GISAXS -- binary | v1.19.0-3 | Debian Science Maintainers | ||
h | h | bossa | F | R | Atmel SAM ARM microcontroller flash programming GUI | v1.9.1-2 | Debian Science Maintainers | ||
h | h | bowtie | F | R | Ultrafast memory-efficient short read aligner | v1.3.1-1 | Debian Med Packaging Team | ||
h | h | bowtie2 | F | R | ultrafast memory-efficient short read aligner | v2.4.4-1 | Debian Med Packaging Team | ||
h | h | boxer | F | R | system deployment ninja tricks | v1.4.2-2 | Debian Perl Group | ||
h | h | boxer-data | F | R | classes and nodes usable by Boxer | v10.9.5 | Boxer developers | ||
h | h | bppphyview | F | R | Bio++ Phylogenetic Viewer | v0.6.1-3 | Debian Med Packaging Team | ||
h | h | brian | F | R | v2.4.2-8 | Debian Med Packaging Team | |||
h | h | busco | F | R | benchmarking sets of universal single-copy orthologs | v5.2.2-2 | Debian Med Packaging Team | ||
h | h | bustools | F | R | program for manipulating BUS files for single cell RNA-Seq datasets | v0.41.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | bwa | F | R | Burrows-Wheeler Aligner | v0.7.17-6 | Debian Med Packaging Team | ||
h | h | c2x | F | R | converter between DFT electronic structure codes formats | v2.40+ds-1 | Debichem Team | ||
h | h | caffe | F | R | Tools for fast, open framework for Deep Learning (CPU_ONLY) | v1.0.0+git20180821.99bd997-8 | Debian Science Maintainers | ||
non-free | h | h | caftools | F | R | maintenance of DNA sequence assemblies | v2.0.3-1 | Steffen Moeller | |
h | h | cairodevice | F | R | GNU R Cairo/Gtk2 device driver package | v2.28.2.1-1 | Dirk Eddelbuettel | ||
h | h | calculix-ccx | F | R | Three-Dimensional Structural Finite Element Program | v2.17-3 | Debian Science Maintainers | ||
h | h | camitk | F | R | v4.1.2-4 | Debian Med Packaging Team | |||
h | h | canu | F | R | single molecule sequence assembler for genomes | v2.0+dfsg-2 | Debian Med Packaging Team | ||
h | h | car | F | R | GNU R Companion to Applied Regression by John Fox | v3.0-12-1 | Dirk Eddelbuettel | ||
carmetal | F | R | dynamic geometry software with highly ergonomic UI | v3.5.2+dfsg-1.3 | Yves Combe | ||||
h | h | casacore | F | R | v3.4.0-2 | Debian Astro Team | |||
casacore-data-tai-utc | F | R | Difference table between TAI and UTC for casacore | v1.3 | Debian Astro Team | ||||
h | h | cassbeam | F | R | Cassegrain antenna modelling | v1.1-3 | Debian Astro Team | ||
h | h | cat-bat | F | R | taxonomic classification of contigs and metagenome-assembled genomes (MAGs) | v5.2.3-1 | Debian Med Packaging Team | ||
h | h | cb2bib | F | R | extract bibliographic references from various sources | v2.0.1-1 | Debian Science Maintainers | ||
h | h | cbflib | F | R | v0.9.6+dfsg1-3 | Debian Science Maintainers | |||
h | h | cbmc | F | R | bounded model checker for C and C++ programs | v5.12-5 | Michael Tautschnig | ||
h | h | cct | F | R | visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences | v1:1.0.2-1 | Debian Med Packaging Team | ||
h | h | cctools | F | R | v9.9-2 | Alastair McKinstry | |||
h | h | cdbfasta | F | R | Constant DataBase indexing and retrieval tools for multi-FASTA files | v1.00+git20181005.014498c+dfsg-4 | Debian Med Packaging Team | ||
h | h | cddlib | F | R | v094m-1 | Debian Math Team | |||
h | h | cdftools | F | R | Diagnostic tools for NEMO netCDF output | v4.0.0-1 | Alastair McKinstry | ||
h | h | cd-hit | F | R | suite of programs designed to quickly group sequences | v4.8.1-4 | Debian Med Packaging Team | ||
h | h | cdk | F | R | Chemistry Development Kit (CDK) Java libraries | v1:2.6-1 | Debian Java Maintainers | ||
h | h | cdo | F | R | Climate Data Operators | v2.0.2-1 | Alastair McKinstry | ||
h | h | centrifuge | F | R | rapid and memory-efficient system for classification of DNA sequences | v1.0.3-10 | Debian Med Packaging Team | ||
h | h | ceres-solver | F | R | v2.0.0+dfsg1-5 | Debian Science Maintainers | |||
h | h | cfortran | F | R | Header file permitting Fortran routines to be called in C/C++ | v20210827-1 | Debian Science Maintainers | ||
h | h | cgal | F | R | v5.3.1-1 | Joachim Reichel | |||
h | h | ch5m3d | F | R | create and visualize 3-dimensional drawings of simple molecules | v1.2.5+dfsg-2.1 | Georges Khaznadar | ||
h | h | changeo | F | R | Repertoire clonal assignment toolkit (Python 3) | v1.2.0-1 | Debian Med Packaging Team | ||
h | h | chealpix | F | R | v3.30.0-9 | Debian Astro Team | |||
h | h | checkit-tiff | F | R | conformance checker for baseline TIFFs | v0.4.2-1 | Debian PhotoTools Maintainers | ||
h | h | chemical-mime-data | F | R | chemical MIME and file type support for desktops | v0.1.94-7.2 | Debichem Team | ||
chemical-structures | F | R | web service providing molecular structures in open formats | v2.2.dfsg.0-19 | Georges Khaznadar | ||||
h | h | chemps2 | F | R | Executable to call libchemps2-3 from the command line | v1.8.10-2 | Debichem Team | ||
h | h | chromhmm | F | R | Chromatin state discovery and characterization | v1.23+dfsg-1 | Debian Med Packaging Team | ||
h | h | chromimpute | F | R | Large-scale systematic epigenome imputation | v1.0.3+dfsg-3 | Debian Med Packaging Team | ||
h | h | cif2cell | F | R | prepare CIF files for electronic structure calculations | v2.0.0a3+dfsg-1 | Debian Science Maintainers | ||
h | h | cif-api | F | R | v0.4.2-3 | Debian Science Maintainers | |||
h | h | cif-tools | F | R | Suite of tools to manipulate, validate and query mmCIF files | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | cimg | F | R | v2.9.4+dfsg-3 | Debian Science Maintainers | |||
h | h | circlator | F | R | circularize genome assemblies | v1.5.6-6 | Debian Med Packaging Team | ||
h | h | ckon | F | R | automatic build tool for ROOT data analysis software | v0.7.1-4 | Debian Science Maintainers | ||
h | h | clearcut | F | R | extremely efficient phylogenetic tree reconstruction | v1.0.9+git20150622.7658e90-1 | Debian Med Packaging Team | ||
h | h | clfft | F | R | v2.12.2-3.1 | Debian Science Maintainers | |||
h | h | clickhouse | F | R | v18.16.1+ds-7.2 | Alexander GQ Gerasiov | |||
h | h | cliquer | F | R | clique searching program | v1.21-3 | Debian Science Maintainers | ||
h | h | clonalframe | F | R | inference of bacterial microevolution using multilocus sequence data | v1.2-11 | Debian Med Packaging Team | ||
h | h | clonalframeml | F | R | Efficient Inference of Recombination in Whole Bacterial Genomes | v1.12-2 | Debian Med Packaging Team | ||
h | h | clonalorigin | F | R | inference of homologous recombination in bacteria using whole genome sequences | v1.0-6 | Debian Med Packaging Team | ||
h | h | cluster | F | R | GNU R package for cluster analysis by Rousseeuw et al | v2.1.2-2 | Dirk Eddelbuettel | ||
h | h | cmor-tables | F | R | MIP tables for the Climate Model Output Rewriter library | v3.3-1.1 | Alastair McKinstry | ||
h | h | cmtk | F | R | Computational Morphometry Toolkit | v3.3.1p2+dfsg-1 | Debian Med Packaging Team | ||
h | h | cnrun | F | R | v2.1.0-3 | Debian Med Packaging Team | |||
h | h | cnvkit | F | R | Copy number variant detection from targeted DNA sequencing | v0.9.9-2 | Debian Med Packaging Team | ||
h | h | coda | F | R | Common Data Access framework for Earth science | v2.23-1 | Debian Science Maintainers | ||
h | h | code-saturne | F | R | General purpose Computational Fluid Dynamics (CFD) software | v6.0.2-2 | Debian Science Maintainers | ||
h | h | codonw | F | R | Correspondence Analysis of Codon Usage | v1.4.4-6 | Debian Med Packaging Team | ||
h | h | cod-tools | F | R | tools for manipulating CIF format files | v3.4.0+dfsg-1 | Debian Science Maintainers | ||
h | h | cohomcalg | F | R | sheaf cohomology of line bundles on toric varieties | v0.32+ds-5 | Debian Math Team | ||
h | h | coils | F | R | coiled coil secondary structure prediction | v2002-9 | Debian Med Packaging Team | ||
h | h | coin3 | F | R | v4.0.0+ds-2 | Debian Science Maintainers | |||
h | h | coinmp | F | R | v1.8.3-3 | Debian Science Maintainers | |||
h | h | coinor-cgl | F | R | v0.60.3+repack1-3 | Debian QA Group | |||
h | h | coinor-csdp | F | R | Software package for semidefinite programming (binaries) | v6.2.0-4 | Debian Math Team | ||
h | h | coinor-osi | F | R | v0.108.6+repack1-2 | Debian QA Group | |||
h | h | coinor-symphony | F | R | COIN-OR solver for mixed-integer linear programs | v5.6.17+dfsg-1 | Debian Science Maintainers | ||
h | h | coinutils | F | R | v2.11.4+repack1-2 | Debian QA Group | |||
collatinus | F | R | lemmatisation of latin text | v12.0-2 | Georges Khaznadar | ||||
h | h | colmap | F | R | Structure-from-Motion and Multi-View Stereo | v3.6+really3.6+git20210519-2 | Gürkan Myczko | ||
h | h | colpack | F | R | v1.0.10-6 | Debian Science Maintainers | |||
h | h | combblas | F | R | v1.6.2-6 | Debian Science Maintainers | |||
h | h | compyle | F | R | Execute a subset of Python on HPC platforms | v0.7-4 | Debian Science Maintainers | ||
h | h | conda-package-handling | F | R | create and extract conda packages of various formats | v1.7.3-2 | Debian Med Packaging Team | ||
h | h | condor | F | R | v8.6.8~dfsg.1-2 | HTCondor Developers | |||
h | h | connectome-workbench | F | R | brain visualization, analysis and discovery tool | v1.5.0-2 | NeuroDebian Team | ||
h | h | console-bridge | F | R | v1.0.1+dfsg2-3 | Debian Science Maintainers | |||
h | h | coq | F | R | proof assistant for higher-order logic (toplevel and compiler) | v8.14.1+dfsg-1 | Debian OCaml Maintainers | ||
h | h | covered | F | R | Verilog code coverage analysis tool | v0.7.10-3.1 | Debian Electronics Team | ||
h | h | covtobed | F | R | convert the coverage track from a BAM file into a BED file | v1.3.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | coyote | F | R | GDL library from D. Fannings IDL courses | v2019.08.19-1 | Debian Astro Team | ||
h | h | cp2k | F | R | Ab Initio Molecular Dynamics | v9.1-1 | Debichem Team | ||
h | h | cpl-plugin-amber | F | R | ESO data reduction pipeline for the AMBER instrument | v4.4.1+dfsg-1 | Debian Astro Team | ||
h | h | cpl-plugin-fors | F | R | ESO data reduction pipeline for the FORS1/2 instruments | v5.5.7+dfsg-2 | Debian Astro Team | ||
h | h | cpl-plugin-giraf | F | R | ESO data reduction pipeline for the GIRAFFE instrument | v2.16.8+dfsg-1 | Debian Astro Team | ||
h | h | cpl-plugin-hawki | F | R | ESO data reduction pipeline for the HAWK-I instrument | v2.4.9+dfsg-1 | Debian Astro Team | ||
h | h | cpl-plugin-muse | F | R | ESO data reduction pipeline for the MUSE instrument | v2.8.5+dfsg-1 | Debian Astro Team | ||
h | h | cpl-plugin-naco | F | R | ESO data reduction pipeline for the NaCo instrument | v4.4.10+dfsg-2 | Debian Astro Team | ||
h | h | cpl-plugin-uves | F | R | ESO data reduction pipeline for the UVES instrument | v6.1.6+dfsg-1 | Debian Astro Team | ||
h | h | cpl-plugin-vimos | F | R | ESO data reduction pipeline for the VIMOS instrument | v4.1.6+dfsg-2 | Debian Astro Team | ||
h | h | cpl-plugin-visir | F | R | ESO data reduction pipeline for the VISIR instrument | v4.3.11+dfsg-1 | Debian Astro Team | ||
h | h | cpl-plugin-xshoo | F | R | ESO data reduction pipeline for the XSHOOTER instrument | v3.5.3+dfsg-1 | Debian Astro Team | ||
h | h | cppad | F | R | Automatic Differentiation of C++ algorithms, dummy package | v2021.00.00.8-1 | Debian Science Maintainers | ||
h | h | cppnumericalsolvers | F | R | C++ library of numerical optimization methods for nonlinear functions | v1.0.0-2 | Debian Science Maintainers | ||
h | h | cpuinfo | F | R | CPU INFOrmation library (binary utilities) | v0.0~git20201217.5916273-2 | Debian Science Maintainers | ||
h | h | crac | F | R | integrated RNA-Seq read analysis | v2.5.2+dfsg-5 | Debian Med Packaging Team | ||
h | h | csvkit | F | R | command-line tools for working with CSV | v1.0.6-1 | Debian Science Maintainers | ||
h | h | ctdconverter | F | R | Convert CTD files into Galaxy tool and CWL CommandLineTool files | v2.1-4 | Debian Med Packaging Team | ||
h | h | cthreadpool | F | R | minimal ANSI C thread pool - development files | v0.0+git20201207.b259a6e-1 | Debian Science Maintainers | ||
h | h | ctsim | F | R | Computed tomography simulator | v6.0.2-5 | Debian Med Packaging Team | ||
h | h | cubature | F | R | v1.0.4+ds-1 | Debian Science Maintainers | |||
non-free | h | h | cufflinks | F | R | Transcript assembly, differential expression and regulation for RNA-Seq | v2.2.1+dfsg.1-9 | Debian Med Packaging Team | |
h | h | cvector | F | R | v1.0.4.1-2 | Debian Science Maintainers | |||
h | h | cvxopt | F | R | v1.2.7+dfsg-2 | Debian Science Maintainers | |||
h | h | cwlformat | F | R | code formatter for Common Workflow Language | v2021.01.05-1 | Debian Med Packaging Team | ||
h | h | cwltool | F | R | Common Workflow Language reference implementation | v3.1.20211104071347-3 | Debian Med Packaging Team | ||
h | h | cyarray | F | R | v1.1-4 | Debian Science Maintainers | |||
gone | h | h | cylc | F | R | v8.0~a2-1 | Alastair McKinstry | ||
h | h | cypari2 | F | R | v2.1.2-2 | Debian Science Maintainers | |||
h | h | cyvcf2 | F | R | VCF parser based on htslib (Python 3) | v0.30.14-1 | Debian Med Packaging Team | ||
h | h | damapper | F | R | long read to reference genome mapping tool | v0.0+git20210330.ab45103-1 | Debian Med Packaging Team | ||
h | h | dart | F | R | v6.9.5-4 | Debian Science Maintainers | |||
h | h | dascrubber | F | R | alignment-based scrubbing pipeline for DNA sequencing reads | v1.1-4 | Debian Med Packaging Team | ||
h | h | datalad | F | R | v0.15.3-1 | NeuroDebian Team | |||
h | h | datalad-container | F | R | DataLad extension for working with containerized environments | v1.1.2-1 | Yaroslav Halchenko | ||
h | h | datamash | F | R | statistics tool for command-line interface | v1.7-2 | Debian Science Maintainers | ||
h | h | dawg | F | R | simulate the evolution of recombinant DNA sequences | v1.2-4 | Debian Med Packaging Team | ||
h | h | dazzdb | F | R | manage nucleotide sequencing read data | v1.0+git20201103.8d98c37-1.1 | Debian Med Packaging Team | ||
h | h | dbi | F | R | GNU R package providing a generic database interface | v1.1.2-1 | Dirk Eddelbuettel | ||
h | h | dcl | F | R | v7.4.1-1 | Youhei SASAKI | |||
h | h | dcm2niix | F | R | next generation DICOM to NIfTI converter | v1.0.20211006-1 | Debian Med Packaging Team | ||
h | h | dcmstack | F | R | DICOM to NIfTI conversion - python3 package | v0.8-3 | Debian Med Packaging Team | ||
h | h | dcmtk | F | R | OFFIS DICOM toolkit command line utilities | v3.6.6-4 | Debian Med Packaging Team | ||
h | h | deal.ii | F | R | v9.3.0-1 | Debian Science Maintainers | |||
h | h | deap | F | R | v1.3.1-3 | Miriam Ruiz | |||
h | h | debian-astro | F | R | v3.0 | Debian Astro Team | |||
h | h | debian-gis | F | R | v0.0.20 | Debian GIS Project | |||
debian-med | F | R | v3.7 | Debian Med Packaging Team | |||||
h | h | debian-pan | F | R | v0.3 | Debian Science Maintainers | |||
h | h | debian-science | F | R | v1.14.2 | Debian Science Maintainers | |||
h | h | delly | F | R | Structural variant discovery by read analysis | v0.8.7-1 | Debian Med Packaging Team | ||
h | h | density-fitness | F | R | Calculates per-residue electron density scores | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | dextractor | F | R | (d)extractor and compression command library | v1.0-5 | Debian Med Packaging Team | ||
dh-fortran-mod | F | R | debhelper add-on to handle Fortran '.mod' files | v0.21 | Debian Science Maintainers | ||||
dh-r | F | R | Debian helper tools for packaging R libraries | v20210816 | Debian R Packages Maintainers | ||||
h | h | dialign-t | F | R | v1.0.2-14 | Debian Med Packaging Team | |||
h | h | dials-data | F | R | Python data files used for regression tests in DIALS, dxtbx, xia2 | v2.2.0-1 | Debian Science Maintainers | ||
h | h | diamond-aligner | F | R | accelerated BLAST compatible local sequence aligner | v2.0.13-1 | Debian Med Packaging Team | ||
h | h | dicom3tools | F | R | DICOM medical image files manipulation and conversion tools | v1.00~20211009110822-1 | Debian Med Packaging Team | ||
h | h | dicomnifti | F | R | converts DICOM files into the NIfTI format | v2.33.1-3 | Debian Med Packaging Team | ||
h | h | dicompyler | F | R | radiation therapy research platform | v0.4.2.0+git20200106.2643e0e-1 | Debian Med Packaging Team | ||
gone | h | h | dindel | F | R | determines indel calls from short-read data | v1.01-wu1-3+dfsg-1 | Debian Med Packaging Team | |
h | h | discosnp | F | R | discovering Single Nucleotide Polymorphism from raw set(s) of reads | v1:2.6.1-1 | Debian Med Packaging Team | ||
h | h | disulfinder | F | R | cysteines disulfide bonding state and connectivity predictor | v1.2.11-11 | Debian Med Packaging Team | ||
h | h | dlib | F | R | v19.10-3.1 | Debian Science Maintainers | |||
h | h | docopt.cpp | F | R | v0.6.2-2.3 | Debian Science Maintainers | |||
h | h | dolfin | F | R | v2019.2.0~git210928.3eacdb4-2 | Debian Science Maintainers | |||
h | h | dolfinx | F | R | v2019.2.0~git20210410.b421249-2 | Debian Science Maintainers | |||
contrib | h | h | doris | F | R | Delft object-oriented radar interferometric software | v5.0.3~beta+dfsg-16 | Debian GIS Project | |
h | h | double-conversion | F | R | v3.1.5-7 | Debian Science Maintainers | |||
h | h | dozzaqueux | F | R | simulator for chemical mixtures | v3.51-2.1 | Georges Khaznadar | ||
h | h | dpuser | F | R | Interactive language for handling numbers, strings, and matrices | v4.1+dfsg-1 | Debian Astro Team | ||
h | h | drawxtl | F | R | crystal structure viewer | v5.5-5 | Debichem Team | ||
h | h | drop-seq | F | R | v2.4.1+dfsg-1 | Debian Med Packaging Team | |||
h | h | dspdfviewer | F | R | Dual-Screen PDF Viewer for LaTeX-beamer | v1.15.1-1.1 | Danny Edel | ||
h | h | dune-common | F | R | v2.8.0-3 | Debian Science Maintainers | |||
h | h | dune-functions | F | R | v2.8.0-2 | Debian Science Maintainers | |||
h | h | dune-geometry | F | R | v2.8.0-2 | Debian Science Maintainers | |||
h | h | dune-grid | F | R | v2.8.0-2 | Debian Science Maintainers | |||
h | h | dune-grid-glue | F | R | v2.8.0-2 | Debian Science Maintainers | |||
h | h | dune-istl | F | R | v2.8.0-2 | Debian Science Maintainers | |||
h | h | dune-localfunctions | F | R | v2.8.0-5 | Debian Science Maintainers | |||
h | h | dune-pdelab | F | R | v2.7~20200605-2 | Debian Science Maintainers | |||
h | h | dune-typetree | F | R | v2.8.0-2 | Debian Science Maintainers | |||
h | h | dune-uggrid | F | R | software framework for finite element methods (development files) | v2.8.0-2 | Debian Science Maintainers | ||
h | h | dwgsim | F | R | short sequencing read simulator | v0.1.12-5 | Debian Med Packaging Team | ||
h | h | dx | F | R | OpenDX (IBM Visualization Data Explorer) - main package | v1:4.4.4-14 | Debian Science Maintainers | ||
h | h | dxflib | F | R | v3.26.4-1 | Debian Science Maintainers | |||
h | h | dynare | F | R | platform for handling a wide class of economic models | v4.6.4-3 | Debian Octave Group | ||
h | h | e-antic | F | R | v0.1.8+ds-2 | Debian Science Maintainers | |||
h | h | easychem | F | R | Draw high-quality molecules and 2D chemical formulas | v0.6-9 | Debichem Team | ||
h | h | ea-utils | F | R | command-line tools for processing biological sequencing data | v1.1.2+dfsg-9 | Debian Med Packaging Team | ||
h | h | ecaccess | F | R | clients to access ECMWF facilities | v4.0.1-1.1 | Alastair McKinstry | ||
h | h | eccodes | F | R | v2.24.0-1 | Alastair McKinstry | |||
h | h | eccodes-python | F | R | Python 3 module Python interface to the ecCodes BUFR and GRIB de/encoder | v2:1.4.0-1 | Alastair McKinstry | ||
h | h | ecflow | F | R | v5.7.2-2 | Alastair McKinstry | |||
h | h | eckit | F | R | v1.18.2-1 | Alastair McKinstry | |||
h | h | eclib | F | R | v20210625-1 | Debian Science Maintainers | |||
h | h | ecopcr | F | R | estimate PCR barcode primers quality | v1.0.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | edfbrowser | F | R | viewer for biosignal storage files such as bdf and edf | v1.88+dfsg-1 | Debian Med Packaging Team | ||
h | h | edge-addition-planarity-suite | F | R | v3.0.1.1-1 | Debian Science Maintainers | |||
h | h | edtsurf | F | R | triangulated mesh surfaces for protein structures | v0.2009-10 | Debian Med Packaging Team | ||
h | h | eegdev | F | R | v0.2-6 | Debian Med Packaging Team | |||
h | h | eigen3 | F | R | v3.4.0-2 | Debian Science Maintainers | |||
h | h | eigensoft | F | R | reduction of population bias for genetic analyses | v7.2.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | elastix | F | R | toolbox for rigid and nonrigid registration of images | v5.0.1-2 | Debian Med Packaging Team | ||
h | h | elkcode | F | R | All-Electron Density-Functional Electronic Structure Code | v6.3.2-2 | Debichem Team | ||
h | h | eln | F | R | v1.4.0-1 | Debian Science Maintainers | |||
h | h | emboss | F | R | European molecular biology open software suite | v6.6.0+dfsg-10 | Debian Med Packaging Team | ||
h | h | e-mem | F | R | Efficient computation of Maximal Exact Matches for very large genomes | v1.0.1-5 | Debian Med Packaging Team | ||
h | h | emoslib | F | R | v2:4.5.9-7 | Alastair McKinstry | |||
h | h | ensmallen | F | R | C++ header-only library for mathematical optimization | v2.18.1-1 | Debian Science Maintainers | ||
h | h | epigrass | F | R | scientific tool for simulations and scenario analysis in network epidemiology | v3.0.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | eso-midas | F | R | European Southern Observatory Munich Image Data Analysis System | v21.02pl1.0-1 | Debian Astro Team | ||
h | h | esorex | F | R | Execution Tool for European Southern Observatory pipelines | v3.13.5+ds-2 | Debian Astro Team | ||
h | h | espresso | F | R | v6.7-2 | Debichem Team | |||
h | h | estscan | F | R | ORF-independent detector of coding DNA sequences | v3.0.3-6 | Debian Med Packaging Team | ||
h | h | esys-particle | F | R | Software for particle-based numerical modelling (MPI version) | v2.3.5+dfsg2-3 | Debian Science Maintainers | ||
h | h | etsf-io | F | R | Binary tools to check, merge and read ETSF files | v1.0.4-5 | Debian Science Maintainers | ||
h | h | evolver | F | R | Surface Evolver | v2.70+ds-8 | Debian Science Maintainers | ||
h | h | examl | F | R | Exascale Maximum Likelihood (ExaML) code for phylogenetic inference | v3.0.22-2 | Debian Med Packaging Team | ||
h | h | expeyes | F | R | hardware & software framework for developing science experiments | v4.8.8+repack-2 | Georges Khaznadar | ||
h | h | eye | F | R | semantic web reasoning engine | v21.1203.1426~ds-1 | Jonas Smedegaard | ||
h | h | faiss | F | R | v1.7.0-1 | Debian Science Maintainers | |||
h | h | farmhash | F | R | v0~git20190513.0d859a8-2 | Debian Science Maintainers | |||
h | h | fast5 | F | R | utilities for manipulating Oxford Nanopore Fast5 files | v0.6.5-5 | Debian Med Packaging Team | ||
h | h | fasta3 | F | R | tools for searching collections of biological sequences | v36.3.8h.2020-02-11-4 | Debian Med Packaging Team | ||
h | h | fastaq | F | R | FASTA and FASTQ file manipulation tools | v3.17.0-4 | Debian Med Packaging Team | ||
h | h | fastjet | F | R | v3.4.0-1 | Debian Science Maintainers | |||
h | h | fastlink | F | R | faster version of pedigree programs of Linkage | v4.1P-fix100+dfsg-4 | Debian Med Packaging Team | ||
h | h | fastp | F | R | Ultra-fast all-in-one FASTQ preprocessor | v0.23.2+dfsg-2 | Debian Med Packaging Team | ||
h | h | fastqc | F | R | quality control for high throughput sequence data | v0.11.9+dfsg-5 | Debian Med Packaging Team | ||
h | h | fastqtl | F | R | Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes | v2.184+dfsg-8 | Debian Med Packaging Team | ||
h | h | fckit | F | R | v0.9.5-1 | Alastair McKinstry | |||
h | h | fcl | F | R | v0.7.0-3 | Debian Science Maintainers | |||
h | h | fcm | F | R | Flexible Configuration Manager | v2021.05.01-2 | Alastair McKinstry | ||
h | h | feedgnuplot | F | R | Pipe-oriented frontend to Gnuplot | v1.60-1 | Debian Science Maintainers | ||
h | h | fenics | F | R | Automated Solution of Differential Equations | v1:2019.2.0.5 | Debian Science Maintainers | ||
h | h | fenics-basix | F | R | v0.3.0-11 | Debian Science Maintainers | |||
h | h | fenics-dolfinx | F | R | v1:0.3.0-12 | Debian Science Maintainers | |||
h | h | fenics-ffcx | F | R | v1:0.3.0-3 | Debian Science Maintainers | |||
h | h | fenicsx-performance-tests | F | R | Performance test codes for FEniCS/DOLFIN-X (binaries) | v0.0~git20210901.25e932a-1 | Debian Science Maintainers | ||
h | h | fermi-lite | F | R | v0.1+git20190320.b499514-1 | Debian Med Packaging Team | |||
h | h | ferret-vis | F | R | Interactive data visualization and analysis environment | v7.6.0-4 | Alastair McKinstry | ||
h | h | feynmf | F | R | set of LaTeX macros for creating Feynman diagrams | v1.08-13 | Thorsten Alteholz | ||
h | h | ffc | F | R | compiler for finite element variational forms (Python 3) | v2019.2.0~git20210115.cb26c91-2 | Debian Science Maintainers | ||
gone | h | h | ffcx | F | R | v2019.2.0~git20210122.22ca4c0-2 | Debian Science Maintainers | ||
h | h | ffindex | F | R | simple index/database for huge amounts of small files | v0.9.9.9-5 | Debian Med Packaging Team | ||
h | h | fflas-ffpack | F | R | Finite field linear algebra subroutines/package | v2.5.0-1 | Debian Math Team | ||
h | h | fftw | F | R | v2.1.5-5 | Debian Science Maintainers | |||
h | h | fiat | F | R | v2019.2.0~git20210419.7d418fa-1 | Debian Science Maintainers | |||
h | h | fig2dev | F | R | Utilities for converting XFig figure files | v1:3.2.8b-1 | Roland Rosenfeld | ||
h | h | filtlong | F | R | quality filtering tool for long reads of genome sequences | v0.2.1-1 | Debian Med Packaging Team | ||
h | h | findimagedupes | F | R | Finds visually similar or duplicate images | v2.19.1-1 | Debian Science Maintainers | ||
h | h | fitsh | F | R | Software package for astronomical image processing | v0.9.4-1 | Debian Astro Team | ||
h | h | fitsverify | F | R | FITS File Format-Verification Tool | v4.20-4 | Debian Astro Team | ||
h | h | fityk | F | R | general-purpose nonlinear curve fitting and data analysis | v1.3.1-7 | Debian Science Maintainers | ||
h | h | flann | F | R | v1.9.1+dfsg-11 | Debian Science Maintainers | |||
h | h | flexbar | F | R | flexible barcode and adapter removal for sequencing platforms | v1:3.5.0-4 | Debian Med Packaging Team | ||
h | h | flexpart | F | R | Particle Dispersion model for tracing air transport phenomena | v9.02-24 | Alastair McKinstry | ||
h | h | flextra | F | R | Trajectory model for tracing air transport phenomena | v5.0-15 | Alastair McKinstry | ||
h | h | flint | F | R | v2.8.4-2 | Debian Math Team | |||
h | h | flint-arb | F | R | v1:2.21.1-2 | Debian Math Team | |||
h | h | form | F | R | Symbolic manipulation system | v4.2.1+git20200217-1 | Debian Science Maintainers | ||
h | h | fplll | F | R | v5.4.1-1 | Debian Science Maintainers | |||
h | h | free42-nologo | F | R | Free42 is a re-implementation of the HP-42S calculator | v3.0.7+ds-1 | Christian Stalp | ||
h | h | freebayes | F | R | Bayesian haplotype-based polymorphism discovery and genotyping | v1.3.5-3 | Debian Med Packaging Team | ||
h | h | freecad | F | R | Extensible Open Source CAx program | v0.19.2+dfsg1-3 | Debian Science Maintainers | ||
h | h | freecontact | F | R | fast protein contact predictor | v1.0.21-11 | Debian Med Packaging Team | ||
h | h | freefem++ | F | R | Provides the binaries of the FreeFem++ FE suite | v4.9+dfsg1-2 | Debian Science Maintainers | ||
h | h | fritzing | F | R | Easy-to-use electronic design software | v0.9.6+dfsg-1 | Enrique Hernández Bello | ||
h | h | frobby | F | R | Computations with monomial ideals | v0.9.5-4 | Debian Math Team | ||
h | h | frogdata | F | R | Data files for Frog | v0.18-2 | Debian Science Maintainers | ||
h | h | fsm-lite | F | R | frequency-based string mining (lite) | v1.0-7 | Debian Med Packaging Team | ||
h | h | funtools | F | R | Minimal buy-in FITS utility package | v1.4.8-1 | Debian Astro Team | ||
h | h | fxt | F | R | v0.3.13-1 | Samuel Thibault | |||
h | h | g2clib | F | R | v1.6.3-1 | Alastair McKinstry | |||
h | h | g3data | F | R | extract data from scanned graphs | v1:1.5.3-3 | Peter S Galbraith | ||
h | h | gabedit | F | R | graphical user interface to Ab Initio packages | v2.5.1+ds-1 | Debichem Team | ||
h | h | gadap | F | R | Development and static libraries for GADAP | v2.0-14 | Alastair McKinstry | ||
h | h | galculator | F | R | scientific calculator | v2.1.4-1.2 | Dmitry Smirnov | ||
h | h | galib | F | R | v1:2.4.7-5 | Debian QA Group | |||
h | h | galileo | F | R | Utility to securely synchronize a Fitbit device with the Fitbit web service | v0.5.1-8 | Debian Med Packaging Team | ||
h | h | gap | F | R | computer algebra system for Groups, Algorithms and Programming | v4.11.1-1 | Bill Allombert | ||
h | h | gap-float | F | R | multi-precision floating-point computation for GAP | v1.0.2+ds-1 | Debian Science Maintainers | ||
h | h | gap-gapdoc | F | R | GAPDoc - A Meta Package for GAP Documentation | v1.6.4-1 | Bill Allombert | ||
h | h | gap-grape | F | R | GRaph Algorithms using PErmutation groups for GAP | v4.8.5+ds-2 | Debian Science Maintainers | ||
h | h | gap-io | F | R | low level C library IO bindings for GAP | v4.7.2+ds-1 | Debian Science Maintainers | ||
h | h | garli | F | R | phylogenetic analysis of molecular sequence data using maximum-likelihood | v2.1-5 | Debian Med Packaging Team | ||
h | h | gatb-core | F | R | Genome Analysis Toolbox with de-Bruijn graph | v1.4.2+dfsg-8 | Debian Med Packaging Team | ||
h | h | gazebo | F | R | Open Source Robotics Simulator - Binaries | v11.9.1+dfsg-2 | Debian Science Maintainers | ||
h | h | gbrowse | F | R | GMOD Generic Genome Browser | v2.56+dfsg-9 | Debian Med Packaging Team | ||
gcc-avr | F | R | GNU C compiler (cross compiler for avr) | v1:5.4.0+Atmel3.6.2-2 | Hakan Ardo | ||||
gcc-defaults | F | R | v1.194 | Debian GCC Maintainers | |||||
h | h | gdal | F | R | v3.4.0+dfsg-1 | Debian GIS Project | |||
h | h | gdpc | F | R | visualiser of molecular dynamic simulations | v2.2.5-15 | Debian Med Packaging Team | ||
gone | h | h | geant321 | F | R | [Physics] Particle detector description and simulation tool | v1:3.21.14.dfsg-11 | Debian Science Maintainers | |
h | h | gelemental | F | R | Periodic Table viewer | v2.0.1-1 | Debichem Team | ||
h | h | gemma | F | R | Genome-wide Efficient Mixed Model Association | v0.98.5+dfsg-1 | Debian Med Packaging Team | ||
h | h | geneagrapher | F | R | Create tree from Mathematics Genealogy Project | v1.0c2+git20200719-1 | Debian Science Maintainers | ||
h | h | genomethreader | F | R | software tool to compute gene structure predictions | v1.7.3+dfsg-6 | Debian Med Packaging Team | ||
h | h | genometools | F | R | versatile genome analysis toolkit | v1.6.2+ds-2 | Debian Med Packaging Team | ||
h | h | geogebra | F | R | Dynamic mathematics software for education | v4.0.34.0+dfsg1-9 | Debian Java Maintainers | ||
h | h | geographiclib | F | R | v1.52-1 | Debian GIS Project | |||
h | h | geoip | F | R | v1.6.12-8 | Patrick Matthäi | |||
h | h | gerbv | F | R | Gerber file viewer (only RS 274 X format) | v2.8.2-1 | Debian Electronics Team | ||
h | h | getfem++ | F | R | v5.3+dfsg1-4 | Debian Science Maintainers | |||
h | h | gf2x | F | R | v1.3.0-2 | Debian Science Maintainers | |||
h | h | gfan | F | R | program for computing with Groebner fans | v0.6.2-6 | Debian Math Team | ||
h | h | gfapy | F | R | flexible and extensible software library for handling sequence graphs | v1.2.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | gff2aplot | F | R | pair-wise alignment-plots for genomic sequences in PostScript | v2.0-14 | Debian Med Packaging Team | ||
h | h | gff2ps | F | R | produces PostScript graphical output from GFF-files | v0.98l-6 | Debian Med Packaging Team | ||
h | h | gffread | F | R | GFF/GTF format conversions, region filtering, FASTA sequence extraction | v0.12.7-2 | Debian Med Packaging Team | ||
h | h | gfsview | F | R | graphical viewer for Gerris simulation files | v20121130+dfsg-7 | Debian Science Maintainers | ||
h | h | gftl | F | R | Containers and iterators for Fortran | v1.3.0+is-really-1.2.7-1 | Debian Science Maintainers | ||
h | h | ghdl | F | R | VHDL compiler/simulator | v1.0.0+dfsg-6 | Debian Electronics Team | ||
h | h | ghemical | F | R | GNOME molecular modelling environment | v3.0.0-5 | Debichem Team | ||
h | h | ghmm | F | R | General Hidden-Markov-Model library - tools | v0.9~rc3-4 | Debian Med Packaging Team | ||
h | h | giac | F | R | v1.7.0.39+dfsg2-1 | Debian Science Maintainers | |||
gone | h | h | giella-core | F | R | GTCORE files for building Giellatekno language packages | v0.1.1~r129227+svn121148-2 | Debian Science Maintainers | |
gone | h | h | giella-sme | F | R | Giellatekno single language data for North Saami | v0.0.20150917~r121176-3 | Debian Science Maintainers | |
h | h | ginac | F | R | v1.8.1-1 | Richard Kreckel | |||
h | h | ginga | F | R | Astronomical image viewer | v3.2.0-2 | Debian Astro Team | ||
gone | h | h | ginkgocadx | F | R | Medical Imaging Software and complete DICOM Viewer | v3.8.8-5 | Debian Med Packaging Team | |
h | h | git-annex | F | R | manage files with git, without checking their contents into git | v8.20211123-1 | Debian Haskell Group | ||
h | h | givaro | F | R | v4.2.0-1 | Debian Math Team | |||
h | h | giza | F | R | v1.2.1-1 | Debian Astro Team | |||
h | h | gl2ps | F | R | v1.4.2+dfsg1-2 | Debian Science Maintainers | |||
h | h | gle-graphics | F | R | Graphics Layout Engine | v4.2.5-9 | Debian Science Maintainers | ||
non-free | h | h | gliese | F | R | stellar data set from the Third Catalogue of Nearby Stars | v3.0.95-2 | Francisco Manuel Garcia Claramonte | |
h | h | glm | F | R | v0.9.9.8+ds-2 | Debian Science Maintainers | |||
h | h | gloo | F | R | v0.0~git20200918.3dc0328-4 | Debian Science Maintainers | |||
h | h | glpk-java | F | R | Java binding to the GNU Linear Programming Kit | v1.12.0-2 | Debian Science Maintainers | ||
h | h | glueviz | F | R | Linked data visualization | v1.0.1+dfsg-2 | Debian Astro Team | ||
h | h | gmap | F | R | spliced and SNP-tolerant alignment for mRNA and short reads | v2021-08-25+ds-1 | Debian Med Packaging Team | ||
h | h | gmp | F | R | v2:6.2.1+dfsg-3 | Debian Science Maintainers | |||
h | h | gmp-ecm | F | R | Factor integers using the Elliptic Curve Method | v7.0.4+ds-6 | Debian Science Maintainers | ||
h | h | gmsh | F | R | Three-dimensional finite element mesh generator | v4.8.4+ds2-2 | Debian Science Maintainers | ||
h | h | gmt | F | R | Generic Mapping Tools | v6.3.0+dfsg-2 | Debian GIS Project | ||
h | h | gmt-dcw | F | R | Digital Chart of the World (DCW) for GMT | v2.0.2-1 | Debian GIS Project | ||
h | h | gnome-chemistry-utils | F | R | v0.14.17-6.1 | Debichem Team | |||
h | h | gnuastro | F | R | GNU Astronomy Utilities programs | v0.16.1-1 | Debian Astro Team | ||
h | h | gnucap | F | R | GNU Circuit Analysis package, main executable | v1:0.36~20171003-1.1 | Debian Electronics Team | ||
h | h | gnudatalanguage | F | R | Free IDL compatible incremental compiler | v1.0.1-3 | Debian Astro Team | ||
h | h | gnuplot | F | R | Command-line driven interactive plotting program. | v5.4.2+dfsg2-2 | Debian Science Maintainers | ||
h | h | gpaw | F | R | DFT and beyond within the projector-augmented wave method | v21.6.0-1 | Debichem Team | ||
h | h | gplots | F | R | GNU R package with tools for plotting data by Greg Warnes et al | v3.1.1-2 | Dirk Eddelbuettel | ||
h | h | gpredict | F | R | Satellite tracking program | v2.3-72-gc596101-3 | Debian Hamradio Maintainers | ||
h | h | gpsd | F | R | Global Positioning System - daemon | v3.22-4 | Bernd Zeimetz | ||
h | h | gpstrans | F | R | communicate via serial port with a Garmin GPS receiver | v0.41-7 | Debian QA Group | ||
h | h | gputils | F | R | GNU PIC utilities | v1.4.0-0.2 | Taisuke Yamada | ||
h | h | gpyfft | F | R | v0.7.1-2 | Debian Science Maintainers | |||
h | h | grabix | F | R | wee tool for random access into BGZF files | v0.1.7-3 | Debian Med Packaging Team | ||
h | h | grace | F | R | XY graphing and plotting tool | v1:5.1.25-12 | Nicholas Breen | ||
h | h | grads | F | R | Grid Analysis and Display System for earth science data | v3:2.2.1-4 | Alastair McKinstry | ||
h | h | graphlan | F | R | circular representations of taxonomic and phylogenetic trees | v1.1.3-4 | Debian Med Packaging Team | ||
h | h | graphviz | F | R | rich set of graph drawing tools | v2.42.2-5 | Laszlo Boszormenyi (GCS) | ||
h | h | grass | F | R | Geographic Resources Analysis Support System (GRASS GIS) | v7.8.6-1 | Debian GIS Project | ||
gregmisc | F | R | GNU R package with miscellaneous functions by Greg Warnes et al | v2.1.5-4 | Dirk Eddelbuettel | ||||
h | h | gretl | F | R | GNU Regression, Econometric & Time-Series Library | v2021d-1 | Dirk Eddelbuettel | ||
h | h | gri | F | R | a language for scientific illustration | v2.12.27-1 | Peter S Galbraith | ||
h | h | gridengine | F | R | v8.1.9+dfsg-10 | Debian HPC Team | |||
h | h | gromacs | F | R | Molecular dynamics simulator, with building and analysis tools | v2021.4-2 | Debichem Team | ||
h | h | gsl | F | R | v2.7.1+dfsg-3 | Dirk Eddelbuettel | |||
non-free | h | h | gsl-doc | F | R | v2.6-2 | Dirk Eddelbuettel | ||
gone | h | h | gtkmathview | F | R | v0.8.0-15 | Debian Science Maintainers | ||
h | h | gtools | F | R | GNU R package with R programming tools by Greg Warnes et al | v3.9.2-2 | Dirk Eddelbuettel | ||
h | h | gts | F | R | v0.7.6+darcs121130-5 | Debian Science Maintainers | |||
h | h | gubbins | F | R | phylogenetic analysis of genome sequences | v2.4.1-4 | Debian Med Packaging Team | ||
h | h | guidata | F | R | v1.8.0-2 | Debian Science Maintainers | |||
h | h | guiqwt | F | R | v3.0.7-2 | Debian Science Maintainers | |||
h | h | gwama | F | R | Genome-Wide Association Meta Analysis | v2.2.2+dfsg-4 | Debian Med Packaging Team | ||
h | h | gwyddion | F | R | Scanning Probe Microscopy visualization and analysis tool | v2.59-1 | Debian Med Packaging Team | ||
h | h | gyoto | F | R | General relativistic geodesic integration and ray-tracing | v1.4.4-7 | Debian Astro Team | ||
h | h | h5py | F | R | v3.6.0-2 | Debian Science Maintainers | |||
h | h | harminv | F | R | extraction of complex frequencies and amplitudes from time series | v1.4.1-3 | Thorsten Alteholz | ||
h | h | harp | F | R | Data harmonization toolset for Earth Observation formats | v1.14-1 | Debian Science Maintainers | ||
h | h | harvest-tools | F | R | archiving and postprocessing for reference-compressed genomic multi-alignments | v1.3-7 | Debian Med Packaging Team | ||
h | h | hdf5 | F | R | v1.10.7+repack-4 | Gilles Filippini | |||
h | h | heaptrack | F | R | heap memory profiler for Linux | v1.3.0-1 | Debian Science Maintainers | ||
h | h | herisvm | F | R | machine learning tools for classification algorithms | v0.9.0-2 | Debian QA Group | ||
h | h | heudiconv | F | R | DICOM converter with support for structure heuristics | v0.10.0-1 | Debian Med Packaging Team | ||
h | h | hhsuite | F | R | sensitive protein sequence searching based on HMM-HMM alignment | v3.3.0+ds-6 | Debian Med Packaging Team | ||
h | h | highwayhash | F | R | v0~git20200803.9490b14-3 | Debian Science Maintainers | |||
h | h | hinge | F | R | long read genome assembler based on hinging | v0.5.0-7 | Debian Med Packaging Team | ||
h | h | hisat2 | F | R | graph-based alignment of short nucleotide reads to many genomes | v2.2.1-3 | Debian Med Packaging Team | ||
h | h | hkl | F | R | v5.0.0.2875-1 | Debian PaN Maintainers | |||
h | h | hmisc | F | R | GNU R miscellaneous functions by Frank Harrell | v4.6-0-1 | Dirk Eddelbuettel | ||
h | h | hmmer | F | R | profile hidden Markov models for protein sequence analysis | v3.3.2+dfsg-1 | Debian Med Packaging Team | ||
hol88 | F | R | Higher Order Logic, system image | v2.02.19940316-35.1 | Camm Maguire | ||||
h | h | hpcc | F | R | HPC Challenge benchmark | v1.5.0-2.1 | Debian Science Maintainers | ||
h | h | htslib | F | R | v1.13+ds-2 | Debian Med Packaging Team | |||
gone | h | h | hyantesite | F | R | geomatic tool to compute neighbourhood population potential | v1.3.0-1.1 | Debian Science Maintainers | |
h | h | hydroffice.bag | F | R | v0.2.15-3 | Debian Science Maintainers | |||
h | h | hyperspy | F | R | interactive analysis of multidimensional datasets | v1.6.1-1 | Debian Science Maintainers | ||
h | h | hyphy | F | R | v2.5.33+dfsg-1 | Debian Med Packaging Team | |||
h | h | hypre | F | R | v2.22.1-3 | Debian Science Maintainers | |||
h | h | ideep | F | R | Intel's mkldnn/dnnl wrapper for pytorch | v0.0~git20210319.8307da3-2 | Debian Science Maintainers | ||
h | h | idlastro | F | R | Low-level astronomy software for GDL | v2021.09.30+dfsg-1 | Debian Astro Team | ||
h | h | idseq-bench | F | R | Benchmark generator for the IDseq Portal | v0.0~git20200902.8241a9a-1 | Debian Med Packaging Team | ||
contrib | h | h | ifeffit | F | R | Interactive XAFS analysis program | v2:1.2.11d-11 | Debian Science Maintainers | |
h | h | ignition-cmake | F | R | Ignition Robotics CMake Library - Development files | v2.9.0-1 | Debian Science Maintainers | ||
h | h | ignition-common | F | R | v3.14.0+dfsg-1 | Debian Science Maintainers | |||
h | h | ignition-common3 | F | R | v3.14.0+dfsg-3 | Debian Science Maintainers | |||
h | h | ignition-fuel-tools | F | R | v4.1.0+dfsg-6 | Debian Science Maintainers | |||
h | h | ignition-fuel-tools4 | F | R | v4.4.0+ds-1 | Debian Science Maintainers | |||
h | h | ignition-math | F | R | v6.8.0+ds-3 | Debian Science Maintainers | |||
h | h | ignition-msgs | F | R | v5.1.0+dfsg-7 | Debian Science Maintainers | |||
h | h | ignition-msgs5 | F | R | v5.8.1+ds-2 | Debian Science Maintainers | |||
h | h | ignition-transport | F | R | v8.0.0+dfsg-3 | Debian Science Maintainers | |||
h | h | ignition-transport8 | F | R | v8.2.1+ds-1 | Debian Science Maintainers | |||
h | h | ignition-utils | F | R | Ignition Utils Library - Development files | v1.1.0+ds-4 | Debian Science Maintainers | ||
h | h | igor | F | R | infers V(D)J recombination processes from sequencing data | v1.4.0+dfsg-3 | Debian Med Packaging Team | ||
h | h | igraph | F | R | v0.8.5+ds1-1 | Debian Med Packaging Team | |||
h | h | igv | F | R | Integrative Genomics Viewer | v2.11.9+dfsg-1 | Debian Med Packaging Team | ||
h | h | imagej | F | R | Image processing program with a focus on microscopy images | v1.53k-2 | Debian Med Packaging Team | ||
h | h | iml | F | R | v1.0.5-1 | Debian Science Maintainers | |||
h | h | impose+ | F | R | Postscript utilities for two-up printing, bbox, etc | v0.2-12.1 | Yaroslav Halchenko | ||
h | h | imview | F | R | Image viewing and analysis application | v1.1.9h-3 | Debian Science Maintainers | ||
h | h | insilicoseq | F | R | sequencing simulator producing realistic Illumina reads | v1.5.4-1 | Debian Med Packaging Team | ||
h | h | intake | F | R | lightweight package for finding and investigating data | v0.6.4-2 | Debian Med Packaging Team | ||
non-free | h | h | intel-mkl | F | R | Intel® Math Kernel Library (Intel® MKL) | v2020.4.304-2 | Debian Science Maintainers | |
h | h | inventor | F | R | v2.1.5-10-24 | Debian Science Maintainers | |||
h | h | ipe | F | R | drawing editor for creating figures in PDF or PS formats | v7.2.24+dfsg1-1 | Debian Science Maintainers | ||
h | h | ipython | F | R | v7.27.0-1 | Debian Python Team | |||
h | h | iraf | F | R | Image Reduction and Analysis Facility | v2.16.1+2021.06.14-3 | Debian Astro Team | ||
h | h | irstlm | F | R | IRST Language Modeling Toolkit | v6.00.05-3 | Debian Science Maintainers | ||
h | h | itksnap | F | R | semi-automatic segmentation of structures in 3D images | v3.6.0-5 | NeuroDebian Team | ||
gone | h | h | its | F | R | GNU R package for handling irregular time series | v1.1.8-8 | Dirk Eddelbuettel | |
h | h | iva | F | R | iterative virus sequence assembler | v1.0.11+ds-1 | Debian Med Packaging Team | ||
h | h | ivar | F | R | functions broadly useful for viral amplicon-based sequencing | v1.3.1+dfsg-4 | Debian Med Packaging Team | ||
h | h | iverilog | F | R | Icarus verilog compiler | v11.0-1.1 | Debian Electronics Team | ||
h | h | jabref | F | R | graphical frontend to manage BibTeX and BibLaTeX databases | v3.8.2+ds-16 | Debian Java Maintainers | ||
h | h | jaligner | F | R | Smith-Waterman algorithm with Gotoh's improvement | v1.0+dfsg-8 | Debian Med Packaging Team | ||
h | h | jalview | F | R | multiple alignment editor | v2.11.1.4+dfsg-2 | Debian Java Maintainers | ||
h | h | jellyfish | F | R | count k-mers in DNA sequences | v2.3.0-12 | Debian Med Packaging Team | ||
h | h | jellyfish1 | F | R | count k-mers in DNA sequences | v1.1.11-6 | Debian Med Packaging Team | ||
h | h | jgrapht | F | R | Java library of graph theory data structures and algorithms | v1.5.1-3 | Debian Science Maintainers | ||
h | h | jhdf | F | R | v2.11.0+dfsg-5 | Debian Science Maintainers | |||
h | h | jmodeltest | F | R | HPC selection of models of nucleotide substitution | v2.1.10+dfsg-11 | Debian Med Packaging Team | ||
h | h | jmol | F | R | Molecular Viewer | v14.32.3+dfsg1-1 | Debichem Team | ||
h | h | joblib | F | R | tools to provide lightweight pipelining in Python | v0.17.0-4 | Debian Science Maintainers | ||
h | h | josm | F | R | Editor for OpenStreetMap | v0.0.svn18303+dfsg-2 | Debian GIS Project | ||
h | h | jube | F | R | JUBE Benchmarking Environment | v2.4.1-1 | Debian HPC Team | ||
h | h | julia | F | R | high-performance programming language for technical computing | v1.5.3+dfsg-3 | Debian Julia Team | ||
h | h | jupyter-notebook | F | R | Jupyter interactive notebook | v6.4.5-2 | Debian Python Team | ||
h | h | jupyter-sphinx | F | R | Jupyter Sphinx Extension - Python3 | v0.3.2-1 | Debian Python Team | ||
h | h | kalign | F | R | Global and progressive multiple sequence alignment | v1:3.31-1 | Debian Med Packaging Team | ||
h | h | kallisto | F | R | near-optimal RNA-Seq quantification | v0.46.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | kalzium | F | R | periodic table and chemistry tools | v4:21.08.0-1 | Debian Qt/KDE Maintainers | ||
h | h | kaptive | F | R | obtain information about K and O types for Klebsiella genome assemblies | v0.7.3-4 | Debian Med Packaging Team | ||
h | h | katomic | F | R | atomix puzzle game | v4:21.08.0-1 | Debian Qt/KDE Maintainers | ||
h | h | kbibtex | F | R | BibTeX editor for KDE | v0.9.90-1 | Debian Science Maintainers | ||
h | h | kernsmooth | F | R | GNU R package for kernel smoothing and density estimation | v2.23-20-1 | Dirk Eddelbuettel | ||
h | h | khmer | F | R | in-memory DNA sequence kmer counting, filtering & graph traversal | v2.1.2+dfsg-10 | Debian Med Packaging Team | ||
h | h | kicad | F | R | Electronic schematic and PCB design software | v6.0.0+dfsg1-1 | Debian Electronics Team | ||
h | h | kile | F | R | KDE Integrated LaTeX Environment | v4:2.9.93-2 | Debian Qt/KDE Maintainers | ||
h | h | kim-api | F | R | v2.2.1-1 | Debian Science Maintainers | |||
h | h | kineticstools | F | R | detection of DNA modifications | v0.6.1+git20210811.276ca9c+dfsg-1 | Debian Med Packaging Team | ||
h | h | king-probe | F | R | Evaluate and visualize protein interatomic packing | v2.18-2 | Debian Med Packaging Team | ||
h | h | kissplice | F | R | Detection of various kinds of polymorphisms in RNA-seq data | v2.5.4+dfsg-1 | Debian Med Packaging Team | ||
h | h | kleborate | F | R | tool to screen Klebsiella genome assemblies | v2.1.0-2 | Debian Med Packaging Team | ||
h | h | klustakwik | F | R | automatic sorting of the samples (spikes) into clusters | v3.0.2+ds-2 | Debian Med Packaging Team | ||
h | h | kma | F | R | mapping genomic sequences to raw reads directly against redundant databases | v1.3.23-2 | Debian Med Packaging Team | ||
h | h | kmc | F | R | count kmers in genomic sequences | v3.1.1+dfsg-4 | Debian Med Packaging Team | ||
h | h | konclude | F | R | tableau-based description logic reasoner for the semantic web | v0.7.0+1138~dfsg-1 | Jonas Smedegaard | ||
h | h | kraken | F | R | assigning taxonomic labels to short DNA sequences | v1.1.1-3 | Debian Med Packaging Team | ||
h | h | kraken2 | F | R | taxonomic classification system using exact k-mer matches | v2.1.2-1 | Debian Med Packaging Team | ||
gone | h | h | ksh | F | R | Real, AT&T version of the Korn shell | v2020.0.0+really93u+20120801-9 | Anuradha Weeraman | |
h | h | kst | F | R | scientific data plotting tool | v2.0.8-5 | Debian QA Group | ||
h | h | kstars | F | R | desktop planetarium, observation planning and telescope control | v5:3.5.6-2 | Debian Qt/KDE Maintainers | ||
h | h | labplot | F | R | interactive graphing and analysis of scientific data | v2.8.2-2 | Debian Qt/KDE Maintainers | ||
h | h | lamarc | F | R | Likelihood Analysis with Metropolis Algorithm using Random Coalescence | v2.1.10.1+dfsg-6 | Debian Med Packaging Team | ||
h | h | lammps | F | R | Molecular Dynamics Simulator | v20210122~gita77bb+ds1-4 | Debian Science Maintainers | ||
h | h | lapack | F | R | v3.10.0-2 | Debian Science Maintainers | |||
gone | h | h | lasagne | F | R | v0.1+git20181019.a61b76f-1 | Debian Science Maintainers | ||
h | h | last-align | F | R | genome-scale comparison of biological sequences | v1256-1 | Debian Med Packaging Team | ||
h | h | lastz | F | R | pairwise aligning DNA sequences | v1.04.15-2 | Debian Med Packaging Team | ||
h | h | lattice | F | R | GNU R package for 'Trellis' graphics | v0.20-45-1 | Dirk Eddelbuettel | ||
h | h | lazyarray | F | R | Python module providing a NumPy-compatible lazily-evaluated array | v0.5.0-1 | Debian Science Maintainers | ||
h | h | lbfgspp | F | R | C++ library that implements the Limited-memory BFGS algorithm | v0.1.0-1 | Debian Science Maintainers | ||
h | h | lcalc | F | R | program for calculating with L-functions | v2.0.5-1 | Debian Math Team | ||
h | h | lefse | F | R | determine features of organisms, clades, taxonomic units, genes | v1.1.2-1 | Debian Med Packaging Team | ||
h | h | libaec | F | R | v1.0.6-1 | Alastair McKinstry | |||
h | h | libbio-tools-phylo-paml-perl | F | R | Bioperl interface to the PAML suite | v1.7.3-3 | Debian Perl Group | ||
h | h | libbio-tools-run-alignment-clustalw-perl | F | R | Bioperl interface to Clustal W | v1.7.4-2 | Debian Perl Group | ||
h | h | libbio-tools-run-alignment-tcoffee-perl | F | R | Bioperl interface to T-Coffee | v1.7.4-2 | Debian Perl Group | ||
h | h | libccd | F | R | v2.1-2 | Debian Science Maintainers | |||
h | h | libccp4 | F | R | v6.5.1-5 | Debian Science Maintainers | |||
h | h | libcerf | F | R | v1.3-2.1 | Debian Science Maintainers | |||
h | h | libcgns | F | R | v3.4.0-3 | Debian Science Maintainers | |||
h | h | libdap | F | R | v3.20.9-1 | Alastair McKinstry | |||
h | h | libdogleg | F | R | v0.15.4-2 | Debian Science Maintainers | |||
h | h | libedlib | F | R | v1.2.7-3 | Debian Med Packaging Team | |||
gone | h | h | libepsilon | F | R | v0.9.2+dfsg-5 | Debian GIS Project | ||
h | h | libfastahack | F | R | v1.0.0+dfsg-9 | Debian Med Packaging Team | |||
h | h | libgdf | F | R | v0.1.3-11 | Debian Med Packaging Team | |||
h | h | libgeotiff | F | R | v1.7.0-2 | Debian GIS Project | |||
h | h | libgetdata | F | R | v0.11.0-2 | Debian Science Maintainers | |||
h | h | libghemical | F | R | v3.0.0-4.3 | Debichem Team | |||
h | h | libgpuarray | F | R | v0.7.6-8 | Debian Science Maintainers | |||
h | h | libgtkdatabox | F | R | v1:0.9.3.1-2 | Debian Science Maintainers | |||
h | h | libint | F | R | v1.2.1-6 | Debichem Team | |||
h | h | libitpp | F | R | v4.3.1-10 | Debian Science Maintainers | |||
libjama | F | R | C++ Linear Algebra Package | v1.2.4-2.1 | Juan Esteban Monsalve Tobon | ||||
h | h | liblbfgs | F | R | v1.10-7 | Debian Science Maintainers | |||
h | h | liblemon | F | R | v1.3.1+dfsg-5 | Debian Med Packaging Team | |||
h | h | liblip | F | R | v2.0.0-1.2 | Juan Esteban Monsalve Tobon | |||
h | h | liblxi | F | R | v1.13-2 | Debian Science Maintainers | |||
h | h | libmatheval | F | R | v1.1.11+dfsg-5 | Debian Science Maintainers | |||
h | h | libmatio | F | R | v1.5.21-1 | Debian Science Maintainers | |||
h | h | libmseed | F | R | v2.19.6-3 | Debian Science Maintainers | |||
h | h | libncl | F | R | v2.1.21+git20210811.b1213a7-1 | Debian Med Packaging Team | |||
h | h | libnop | F | R | C++ Native Object Protocols | v0.0~git20200728.45dfe0f-4 | Debian Science Maintainers | ||
h | h | liborigin2 | F | R | v2:20110117-6 | Debian Science Maintainers | |||
h | h | libparsington-java | F | R | mathematical expression parser for Java | v1.0.1-1.1 | Debian Java Maintainers | ||
h | h | libqglviewer | F | R | v2.6.3+dfsg2-9 | Debian Science Maintainers | |||
h | h | librecad | F | R | Computer-aided design (CAD) system | v2.1.3-1.3 | Debian Science Maintainers | ||
h | h | librsb | F | R | v1.2.0.10+dfsg-1 | Debian Science Maintainers | |||
h | h | libsecrecy | F | R | v0.0.5+dfsg-2 | Debian Med Packaging Team | |||
h | h | libsmithwaterman | F | R | v0.0+git20160702.2610e25-12 | Debian Med Packaging Team | |||
h | h | libssw | F | R | v1.1-13 | Debian Med Packaging Team | |||
h | h | libswe | F | R | v1.80.00.0002-1.1 | Paul Elliott | |||
h | h | libtnt | F | R | interface for scientific computing in C++ | v1.2.6-1.1 | Juan Esteban Monsalve Tobon | ||
h | h | libvcflib | F | R | v1.0.2+dfsg-4 | Debian Med Packaging Team | |||
h | h | libvigraimpex | F | R | v1.11.1+dfsg-8 | Debian Science Maintainers | |||
h | h | libxc | F | R | v5.1.7-1 | Debichem Team | |||
h | h | libxray-scattering-perl | F | R | x-ray scattering data for the elements | v3.0.1-2.1 | Debian Perl Group | ||
h | h | libxray-spacegroup-perl | F | R | symmetry operations for the crystal space groups | v0.1.1-3.1 | Debian Perl Group | ||
h | h | liggghts | F | R | Open Source DEM Particle Simulation Software. | v3.8.0+repack1-9 | Debian Science Maintainers | ||
h | h | lighter | F | R | fast and memory-efficient sequencing error corrector | v1.1.2-6 | Debian Med Packaging Team | ||
h | h | lightspeed | F | R | Shows how objects moving at relativistic speeds look like | v1.2a.debian.1-3 | Debian QA Group | ||
h | h | linbox | F | R | v1.7.0-2 | Debian Math Team | |||
h | h | link-grammar | F | R | Carnegie Mellon University's link grammar parser | v5.10.2~dfsg-2 | Jonas Smedegaard | ||
h | h | litl | F | R | v0.1.9-12 | Samuel Thibault | |||
h | h | littler | F | R | GNU R scripting and command-line front-end -- transition package | v0.3.15-1 | Dirk Eddelbuettel | ||
h | h | lme4 | F | R | GNU R package for linear mixed effects model fitting | v1.1-27.1-2 | Dirk Eddelbuettel | ||
h | h | lmfit-py | F | R | v1.0.2-1 | Debian Science Maintainers | |||
h | h | lmtest | F | R | GNU R package for diagnostic checking in linear models | v0.9.39-1 | Dirk Eddelbuettel | ||
h | h | logol | F | R | Pattern matching tool using Logol language | v1.7.9+dfsg-1 | Debian Med Packaging Team | ||
h | h | lrslib | F | R | package to enumerate vertices and extreme rays of a convex polyhedron | v0.71a-1 | David Bremner | ||
h | h | lttoolbox | F | R | Apertium lexical processing modules and tools | v3.5.4-1 | Debian Science Maintainers | ||
h | h | lumpy-sv | F | R | general probabilistic framework for structural variant discovery | v0.3.1+dfsg-6 | Debian Med Packaging Team | ||
h | h | lxi-tools | F | R | LAN eXtensions for Instrumentation (LXI) software interface | v1.21-2 | Debian Science Maintainers | ||
h | h | lynkeos.app | F | R | GNUstep app for processing planetary astronomical images | v3.4+dfsg1-3 | Debian GNUstep maintainers | ||
h | h | macaulay2 | F | R | Software system for algebraic geometry research | v1.19.1+ds-4 | Debian Math Team | ||
h | h | macaulay2-jupyter-kernel | F | R | Jupyter kernel for Macaulay2 | v0.6.7~beta-2 | Debian Science Maintainers | ||
h | h | macromoleculebuilder | F | R | v3.5+dfsg-4 | Debichem Team | |||
h | h | macs | F | R | Model-based Analysis of ChIP-Seq on short reads sequencers | v2.2.7.1-5 | Debian Med Packaging Team | ||
h | h | macsyfinder | F | R | detection of macromolecular systems in protein datasets | v2.0~rc4-1 | Debian Med Packaging Team | ||
h | h | madlib | F | R | v1.3.0-2.2 | Christophe Prud'homme | |||
h | h | maffilter | F | R | process genome alignment in the Multiple Alignment Format | v1.3.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | mafft | F | R | Multiple alignment program for amino acid or nucleotide sequences | v7.490-1 | Debian Med Packaging Team | ||
h | h | magic | F | R | VLSI layout tool | v8.3.105+ds.1-1.1 | Debian Science Maintainers | ||
h | h | magics++ | F | R | Executables for the magics++ library | v4.10.0.real-1 | Alastair McKinstry | ||
contrib | h | h | magma | F | R | v2.5.4+ds-3 | Debian Science Maintainers | ||
h | h | magnus | F | R | Very simple screen magnifier | v1:1.0.3-3 | Debian+Ubuntu MATE Packaging Team | ||
h | h | make-dfsg | F | R | v4.3-4.1 | Manoj Srivastava | |||
h | h | mapdamage | F | R | tracking and quantifying damage patterns in ancient DNA sequences | v2.2.1+dfsg-2 | Debian Med Packaging Team | ||
h | h | mapnik | F | R | v3.1.0+ds-1 | Debian GIS Project | |||
h | h | mapsembler2 | F | R | bioinformatics targeted assembly software | v2.2.4+dfsg1-4 | Debian Med Packaging Team | ||
h | h | mapserver | F | R | v7.6.4-2 | Debian GIS Project | |||
h | h | mash | F | R | fast genome and metagenome distance estimation using MinHash | v2.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | massxpert | F | R | polymer chemistry modelling and mass spectrometry data simulation (runtime) | v6.0.2-1 | Debichem Team | ||
h | h | mathgl | F | R | library for scientific graphs (utilities and examples) | v2.5-2 | Debian Science Maintainers | ||
h | h | mathic | F | R | v1.0~git20211001-1 | Debian Science Maintainers | |||
h | h | mathicgb | F | R | Compute Groebner bases (command line tool) | v1.0~git20211216-1 | Debian Math Team | ||
matlab-support | F | R | distro integration for local MATLAB installations | v0.0.23 | Debian Science Maintainers | ||||
h | h | matplotlib | F | R | v3.5.1-1 | Sandro Tosi | |||
h | h | mauve-aligner | F | R | multiple genome alignment | v2.4.0+4736-4 | Debian Med Packaging Team | ||
maxima | F | R | Computer algebra system -- base system | v5.45.1-8 | Camm Maguire | ||||
h | h | maxima-sage | F | R | Computer algebra system -- base system | v5.45.1-1 | Debian Math Team | ||
h | h | mayavi2 | F | R | scientific visualization package for 2-D and 3-D data | v4.7.1-3 | Debian Python Team | ||
h | h | mbdyn | F | R | multibody analysis code | v1.7.3-1 | Debian Science Maintainers | ||
h | h | med-fichier | F | R | v4.1.0+repack-3 | Debian Science Maintainers | |||
h | h | meep | F | R | software package for FDTD simulation | v1.17.1-1 | Thorsten Alteholz | ||
h | h | meep-mpi-default | F | R | software package for FDTD simulation, parallel (OpenMPI) version | v1.17.1-2 | Thorsten Alteholz | ||
h | h | meep-openmpi | F | R | software package for FDTD simulation, parallel (OpenMPI) version | v1.17.1-2 | Thorsten Alteholz | ||
h | h | megahit | F | R | ultra-fast and memory-efficient meta-genome assembler | v1.2.9-3 | Debian Med Packaging Team | ||
h | h | memtailor | F | R | v1.0~git20211001-1 | Debian Science Maintainers | |||
h | h | merkaartor | F | R | map editor for OpenStreetMap.org | v0.19.0+ds-2 | Debian GIS Project | ||
h | h | meschach | F | R | v1.2b-17 | Debian Science Maintainers | |||
h | h | meshlab | F | R | System for processing and editing triangular meshes | v2020.09+dfsg1-2 | Debian Science Maintainers | ||
h | h | metaphlan2 | F | R | Metagenomic Phylogenetic Analysis | v3.0.13-1 | Debian Med Packaging Team | ||
h | h | metastudent-data | F | R | predictor of Gene Ontology terms from protein sequence - data files | v2.0.1-7 | Debian Med Packaging Team | ||
h | h | metview | F | R | Interactive data visualization and analysis environment, | v5.14.0-1 | Alastair McKinstry | ||
h | h | mgcv | F | R | GNU R package for multiple parameter smoothing estimation | v1.8-38-1 | Dirk Eddelbuettel | ||
h | h | mia | F | R | v2.4.7-8 | Debian Med Packaging Team | |||
h | h | mialmpick | F | R | Tools for landmark picking in 3D volume data sets | v0.2.15-2 | Debian Med Packaging Team | ||
h | h | microbiomeutil | F | R | Microbiome Analysis Utilities | v20101212+dfsg1-4 | Debian Med Packaging Team | ||
h | h | minc-tools | F | R | MNI medical image format tools | v2.3.00+dfsg-7 | Debian Med Packaging Team | ||
h | h | mindthegap | F | R | performs detection and assembly of DNA insertion variants in NGS read datasets | v2.2.3-4 | Debian Med Packaging Team | ||
h | h | minexpert2 | F | R | MS^n mass spectrometric data visualization and mining (runtime) | v8.1.1-1 | Debichem Team | ||
h | h | minia | F | R | short-read biological sequence assembler | v3.2.6-1 | Debian Med Packaging Team | ||
h | h | miniasm | F | R | ultrafast de novo assembler for long noisy DNA sequencing reads | v0.3+dfsg-3 | Debian Med Packaging Team | ||
h | h | minieigen | F | R | v0.50.3+dfsg1-13 | Debian Science Maintainers | |||
h | h | minimac4 | F | R | Fast Imputation Based on State Space Reduction HMM | v1.0.2-4 | Debian Med Packaging Team | ||
h | h | minimap | F | R | tool for approximate mapping of long biosequences such as DNA reads | v0.2-6 | Debian Med Packaging Team | ||
h | h | minimap2 | F | R | versatile pairwise aligner for genomic and spliced nucleotide sequences | v2.22+dfsg-3 | Debian Med Packaging Team | ||
h | h | mipe | F | R | Tools to store PCR-derived data | v1.1-9 | Debian Med Packaging Team | ||
h | h | mirtop | F | R | annotate miRNAs with a standard mirna/isomir naming | v0.4.24-1 | Debian Med Packaging Team | ||
h | h | misc3d | F | R | GNU R collection of 3d plot functions and rgl-based isosurfaces | v0.9-1-1 | Dirk Eddelbuettel | ||
h | h | missfits | F | R | Basic maintenance and packaging tasks on FITS files | v2.8.0-5 | Debian Astro Team | ||
h | h | mlpack | F | R | v3.4.2-1 | Debian Science Maintainers | |||
h | h | mlpost | F | R | OCaml interface to Metapost (command-line tool) | v0.9-1 | Debian OCaml Maintainers | ||
h | h | mlpy | F | R | v3.5.0+ds-1.3 | Debian Science Maintainers | |||
h | h | mmseqs2 | F | R | ultra fast and sensitive protein search and clustering | v13-45111+ds-2 | Debian Med Packaging Team | ||
h | h | mocassin | F | R | MOnte CArlo SimulationS of Ionised Nebulae | v2.02.73.2-1 | Debian Astro Team | ||
h | h | modules | F | R | Modular system for handling environment variables | v5.0.1-1 | Alastair McKinstry | ||
h | h | mona | F | R | theorem prover based on automata | v1.4-18-1 | Debian Science Maintainers | ||
h | h | mosdepth | F | R | BAM/CRAM depth calculation biological sequencing | v0.3.2+ds-1 | Debian Med Packaging Team | ||
h | h | mothur | F | R | sequence analysis suite for research on microbiota | v1.46.1-1 | Debian Med Packaging Team | ||
h | h | mpb | F | R | MIT Photonic-Bands | v1.11.1-4 | Thorsten Alteholz | ||
h | h | mpfi | F | R | v1.5.3+ds-6 | Debian Science Maintainers | |||
h | h | mpfit | F | R | Robust non-linear least squares curve fitting for GDL | v1.85+2017.01.03-4 | Debian Astro Team | ||
h | h | mpfrc++ | F | R | multi-precision floating point number class for C++ | v3.6.8+ds-3 | Debian Science Maintainers | ||
h | h | mpi4py | F | R | v3.1.3-1 | Debian Science Maintainers | |||
h | h | mpi4py-fft | F | R | v2.0.4-1 | Debian Science Maintainers | |||
h | h | mpich | F | R | Implementation of the MPI Message Passing Interface standard | v3.4.1-5 | Debian Science Maintainers | ||
mpi-defaults | F | R | v1.14 | Debian Science Maintainers | |||||
h | h | mpqc | F | R | Massively Parallel Quantum Chemistry Program | v2.3.1-21 | Debichem Team | ||
h | h | mpsolve | F | R | Multiprecision polynomial solver (command line version) | v3.2.1-5 | Debian Science Maintainers | ||
h | h | mrbayes | F | R | Bayesian Inference of Phylogeny | v3.2.7a-5 | Debian Med Packaging Team | ||
h | h | mrgingham | F | R | Chessboard finder for visual calibration routines | v1.20-4 | Debian Science Maintainers | ||
h | h | mricron | F | R | magnetic resonance image conversion, viewing and analysis | v1.2.20211006+dfsg-1 | Debian Med Packaging Team | ||
h | h | mrpt | F | R | v1:2.4.0+ds-4 | José Luis Blanco Claraco | |||
h | h | mrtrix3 | F | R | diffusion-weighted MRI white matter tractography | v3.0.3-2 | Debian Med Packaging Team | ||
h | h | mshr | F | R | v2019.2.0~git20200924.c27eb18+dfsg1-7 | Debian Science Maintainers | |||
h | h | msxpertsuite | F | R | mass spectrometry software suite - metapackage | v5.8.9-1 | Debichem Team | ||
h | h | multcomp | F | R | GNU R package for multiple comparison procedures | v1.4-17-2 | Dirk Eddelbuettel | ||
h | h | multiqc | F | R | output integration for RNA sequencing across tools and samples | v1.11+dfsg-1 | Debian Med Packaging Team | ||
h | h | mummer | F | R | Efficient sequence alignment of full genomes | v3.23+dfsg-7 | Debian Med Packaging Team | ||
h | h | mumps | F | R | v5.4.1-2 | Debian Science Maintainers | |||
h | h | munipack | F | R | Astronomical photometry software package | v0.5.14-2 | Debian Astro Team | ||
h | h | murasaki | F | R | homology detection tool across multiple large genomes | v1.68.6-13 | Debian Med Packaging Team | ||
h | h | mvtnorm | F | R | GNU R package to compute multivariate Normal and T distributions | v1.1-3-1 | Dirk Eddelbuettel | ||
h | h | nanolyse | F | R | remove lambda phage reads from a fastq file | v1.2.0-2 | Debian Med Packaging Team | ||
h | h | nanook | F | R | pre- and post-alignment analysis of nanopore sequencing data | v1.33+dfsg-4 | Debian Med Packaging Team | ||
h | h | nanopolish | F | R | consensus caller for nanopore sequencing data | v0.13.3-2 | Debian Med Packaging Team | ||
h | h | nanosv | F | R | structural variant caller for nanopore data | v1.2.4+git20190409.c1ae30c-6 | Debian Med Packaging Team | ||
h | h | nautic | F | R | computation of observer position in astro-navigation | v1.5-5 | Thorsten Alteholz | ||
h | h | nauty | F | R | library for graph automorphisms -- interface and tools | v2.7r3+ds-1 | Debian Science Maintainers | ||
h | h | nbsphinx-link | F | R | sphinx extension for including notebooks outside of sphinx root | v1.3.0-3 | Debian Science Maintainers | ||
h | h | ncbi-acc-download | F | R | download genome files from NCBI by accession | v0.2.8-1 | Debian Med Packaging Team | ||
h | h | ncbi-blast+ | F | R | next generation suite of BLAST sequence search tools | v2.12.0+ds-2 | Debian Med Packaging Team | ||
h | h | ncbi-entrez-direct | F | R | NCBI Entrez utilities on the command line | v14.6.20210224+dfsg-5 | Debian Med Packaging Team | ||
h | h | ncl | F | R | v6.6.2-10 | Alastair McKinstry | |||
h | h | nco | F | R | Command-line operators to analyze netCDF files | v5.0.4-1 | Debian GIS Project | ||
h | h | neat | F | R | Nebular Empirical Analysis Tool | v2.3.2-2 | Debian Astro Team | ||
h | h | neobio | F | R | computes alignments of amino acid and nucleotide sequences | v0.0.20030929-6 | Debian Med Packaging Team | ||
h | h | netcdf | F | R | v1:4.8.1-1 | Debian GIS Project | |||
h | h | netcdf4-python | F | R | v1.5.7-1 | Debian GIS Project | |||
h | h | netgen | F | R | Automatic 3d tetrahedral mesh generator | v6.2.2006+really6.2.1905+dfsg-4 | Debian Science Maintainers | ||
h | h | neurodebian | F | R | neuroscience-oriented distribution - repository configuration | v0.41.0 | NeuroDebian Team | ||
h | h | nexus | F | R | v4.4.3-5 | Debian Science Maintainers | |||
h | h | ngmlr | F | R | CoNvex Gap-cost alignMents for Long Reads | v0.2.7+git20210816.a2a31fb+dfsg-2 | Debian Med Packaging Team | ||
h | h | ngspice | F | R | Spice circuit simulator | v35+ds-1 | Debian Electronics Team | ||
h | h | nibabel | F | R | v3.2.1-3 | Debian Med Packaging Team | |||
h | h | nifticlib | F | R | v3.0.1-8 | Debian Med Packaging Team | |||
h | h | nim-kexpr | F | R | kexpr math expressions for nim | v0.0.2-3 | Debian Med Packaging Team | ||
h | h | nim-lapper | F | R | simple, fast interval searches for nim | v0.1.7-4 | Debian Med Packaging Team | ||
h | h | nlme | F | R | GNU R package for (non-)linear mixed effects models | v3.1.153-1 | Dirk Eddelbuettel | ||
h | h | nlopt | F | R | v2.7.1-2 | Debian Science Maintainers | |||
h | h | nltk | F | R | Python3 libraries for natural language processing | v3.6.5-1 | Debian Science Maintainers | ||
h | h | node-pinkyswear | F | R | very small implementation of the Promises/A+ specification | v2.2.3+dfsg-3 | Debian Science Maintainers | ||
h | h | node-shiny-server-client | F | R | browser library for connecting to Shiny Server | v1.0.0+git20180820.eba5e90+dfsg-5 | Debian Science Maintainers | ||
gone | h | h | node-sphericalmercator | F | R | Spherical Mercator projection support for NodeJS | v1.0.1-2.1 | Debian Javascript Maintainers | |
gone | h | h | node-srs | F | R | spatial reference library for Node.js | v1.2.0+~2.6.2-1 | Debian Javascript Maintainers | |
h | h | ntl | F | R | v11.5.1-1 | Debian Science Maintainers | |||
h | h | numba | F | R | v0.52.0-5 | Debian Science Maintainers | |||
h | h | numcodecs | F | R | buffer compression and transformation codecs for Python | v0.8.1+ds-3 | Debian Science Maintainers | ||
h | h | numexpr | F | R | Fast numerical array expression evaluator for Python 3 and NumPy | v2.8.1-1 | Debian Science Maintainers | ||
h | h | numpy | F | R | v1:1.21.5-1 | Sandro Tosi | |||
h | h | nwchem | F | R | High-performance computational chemistry software | v7.0.2-1 | Debichem Team | ||
h | h | oar | F | R | v2.5.9-1 | Pierre Neyron | |||
h | h | oasis3 | F | R | v3.mct+dfsg.121022-16 | Alastair McKinstry | |||
h | h | oce | F | R | v0.18.3-2 | Debian Science Maintainers | |||
h | h | octave | F | R | GNU Octave language for numerical computations | v6.2.0-1 | Debian Octave Group | ||
h | h | octave-brain2mesh | F | R | automated brain tetrahedral mesh generation toolbox for Octave | v0.7.9-2 | Debian Octave Group | ||
h | h | octave-geometry | F | R | extension of MatGeom functionality in Octave | v4.0.0-4 | Debian Octave Group | ||
h | h | octave-iso2mesh | F | R | 3D surface and volumetric mesh generator for Octave | v1.9.6+ds-7 | Debian Octave Group | ||
h | h | octave-optim | F | R | unconstrained non-linear optimization toolkit for Octave | v1.6.1-2 | Debian Octave Group | ||
h | h | octave-statistics | F | R | additional statistical functions for Octave | v1.4.3-2 | Debian Octave Group | ||
h | h | octave-symbolic | F | R | symbolic package for Octave | v2.9.0-3 | Debian Octave Group | ||
h | h | octomap | F | R | v1.9.7+dfsg-3 | Debian Science Maintainers | |||
h | h | odil | F | R | C++11 library for the DICOM standard (application) | v0.12.1-4 | Debian Med Packaging Team | ||
h | h | odin | F | R | develop, simulate and run magnetic resonance sequences | v2.0.5-1 | Debian Med Packaging Team | ||
h | h | ogdi-dfsg | F | R | v4.1.0+ds-5 | Debian GIS Project | |||
h | h | ompl | F | R | v1.5.2+ds1-1 | Debian Science Maintainers | |||
h | h | onednn | F | R | v2.2.2+ds-3 | Debian Science Maintainers | |||
h | h | onnx | F | R | v1.7.0+dfsg-3 | Debian Science Maintainers | |||
h | h | open3d | F | R | v0.9.0+ds-8 | Debian Science Maintainers | |||
h | h | openbabel | F | R | Chemical toolbox utilities (cli) | v3.1.1+dfsg-6 | Debichem Team | ||
h | h | openblas | F | R | v0.3.19+ds-1 | Debian Science Maintainers | |||
h | h | opencascade | F | R | v7.5.1+dfsg1-2 | Debian Science Maintainers | |||
h | h | open-coarrays | F | R | v2.9.2-3 | Alastair McKinstry | |||
h | h | opencv | F | R | v4.5.4+dfsg-9 | Debian Science Maintainers | |||
h | h | opendrop | F | R | fully-featured pendant drop tensiometry software | v3.3.1-2 | Debichem Team | ||
h | h | openems | F | R | Electromagnetic simulator | v0.0.35+git20190103.6a75e98+dfsg.1-3 | Debian Science Maintainers | ||
h | h | openfoam | F | R | Open source toolbox for Computational Fluid Dynamics (CFD) - binaries | v1912.200626-1 | Debian Science Maintainers | ||
h | h | openkim-models | F | R | Models and model-drivers for KIM-API | v1:2021.01.28-2 | Debian Science Maintainers | ||
h | h | openmolcas | F | R | Quantum chemistry software package | v20.10-2 | Debichem Team | ||
h | h | openmotor | F | R | internal ballistics simulator for rocket motor experimenters | v0.4.0-4 | Bdale Garbee | ||
h | h | openmpi | F | R | v4.1.2-1 | Alastair McKinstry | |||
h | h | openms | F | R | package for LC/MS data management and analysis | v2.6.0+cleaned1-3 | Debichem Team | ||
h | h | openpyxl | F | R | Python 3 module to read/write OpenXML xlsx/xlsm files | v3.0.9-1 | Debian Science Maintainers | ||
h | h | openstructure | F | R | Open-Source Computational Structural Biology Framework | v2.2.0-9 | Debichem Team | ||
h | h | opensurgsim | F | R | v0.7.0-11 | Debian Med Packaging Team | |||
h | h | openuniverse | F | R | 3D Universe Simulator | v1.0beta3.1+dfsg-7 | Javier Fernández-Sanguino Peña | ||
h | h | optimir | F | R | Integrating genetic variations in miRNA alignment | v1.1-1 | Debian Med Packaging Team | ||
h | h | orca | F | R | Scriptable screen reader | v41.1-1+0 | Debian Accessibility Team | ||
h | h | orocos-bfl | F | R | v0.8.0-6 | Debian Science Maintainers | |||
h | h | orocos-kdl | F | R | v1.5.1-2 | Debian Science Maintainers | |||
h | h | orthanc | F | R | Lightweight, RESTful DICOM server for medical imaging | v1.9.7+dfsg-5 | Debian Med Packaging Team | ||
h | h | orthanc-dicomweb | F | R | Plugin to extend Orthanc with support of WADO and DICOMweb | v1.7+dfsg-1 | Debian Med Packaging Team | ||
h | h | orthanc-gdcm | F | R | DICOM transcoder/decoder for Orthanc using GDCM (notably for JPEG2k) | v1.4-2 | Debian Med Packaging Team | ||
h | h | orthanc-imagej | F | R | ImageJ plugin to import images from Orthanc | v1.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | orthanc-mysql | F | R | Plugins to use MySQL or MariaDB as a database back-end to Orthanc | v4.3-2 | Debian Med Packaging Team | ||
h | h | orthanc-postgresql | F | R | Plugins to use PostgreSQL as a database back-end to Orthanc | v4.0-4 | Debian Med Packaging Team | ||
h | h | orthanc-python | F | R | Develop plugins for Orthanc using the Python programming language | v3.4+ds-1 | Debian Med Packaging Team | ||
h | h | orthanc-webviewer | F | R | Web viewer of medical images for Orthanc | v2.7-6 | Debian Med Packaging Team | ||
h | h | orthanc-wsi | F | R | Whole-slide imaging support for Orthanc (digital pathology) | v1.1-1 | Debian Med Packaging Team | ||
h | h | oscar | F | R | Open Source CPAP Analysis Reporter (OSCAR) | v1.3.0-1 | Debian Med Packaging Team | ||
h | h | osm2pgsql | F | R | OpenStreetMap data to PostgreSQL converter | v1.5.1+ds-1 | Debian GIS Project | ||
h | h | osmpbf | F | R | v1.5.0-2 | Debian GIS Project | |||
h | h | otb | F | R | v7.2.0+dfsg-1 | Debian GIS Project | |||
h | h | otf | F | R | v1.12.5+dfsg-8 | Samuel Thibault | |||
h | h | paleomix | F | R | pipelines and tools for the processing of ancient and modern HTS data | v1.3.6-1 | Debian Med Packaging Team | ||
h | h | palp | F | R | Package for Analyzing Lattice Polytopes | v2.20-2 | Debian Science Maintainers | ||
h | h | pandas | F | R | v1.3.4+dfsg-7 | Debian Science Maintainers | |||
h | h | paraclu | F | R | Parametric clustering of genomic and transcriptomic features | v10-1 | Debian Med Packaging Team | ||
h | h | parafly | F | R | parallel command processing using OpenMP | v0.1.0-3 | Debian Med Packaging Team | ||
h | h | parallel-fastq-dump | F | R | parallel fastq-dump wrapper | v0.6.7-1 | Debian Med Packaging Team | ||
h | h | paraview | F | R | Parallel Visualization Application | v5.10.0~rc1-1 | Debian Science Maintainers | ||
h | h | pari | F | R | v2.13.3-1 | Bill Allombert | |||
h | h | parsinsert | F | R | Parsimonious Insertion of unclassified sequences into phylogenetic trees | v1.04-10 | Debian Med Packaging Team | ||
h | h | parsnp | F | R | rapid core genome multi-alignment | v1.5.6+dfsg-1 | Debian Med Packaging Team | ||
h | h | patman | F | R | rapid alignment of short sequences to large databases | v1.2.2+dfsg-8 | Debian Med Packaging Team | ||
h | h | pbdagcon | F | R | sequence consensus using directed acyclic graphs | v0.3+git20180411.c14c422+dfsg-5 | Debian Med Packaging Team | ||
h | h | pbsuite | F | R | software for Pacific Biosciences sequencing data | v15.8.24+dfsg-7 | Debian Med Packaging Team | ||
h | h | pcl | F | R | v1.12.1+dfsg-3 | Debian Science Maintainers | |||
h | h | pdf-presenter-console | F | R | multi-monitor presentation tool (ala Keynote) for PDF files | v4.5.0-3 | Barak A. Pearlmutter | ||
h | h | pdl | F | R | perl data language: Perl extensions for numerics | v1:2.063-2 | Debian Perl Group | ||
h | h | peptidebuilder | F | R | generate atomic oligopeptide 3D structure from sequence | v1.1.0-3 | Debian Med Packaging Team | ||
perm | F | R | efficient mapping of short reads with periodic spaced seeds | v0.4.0-8 | Debian Med Packaging Team | ||||
h | h | petsc | F | R | v3.15.5+dfsg1-1 | Debian Science Maintainers | |||
h | h | petsc4py | F | R | v3.15.1-2 | Debian Science Maintainers | |||
non-free | h | h | pgplot5 | F | R | large subroutine library for plotting scientific data | v5.2.2-19.4 | Carlo Segre | |
h | h | phast | F | R | phylogenetic analysis with space/time models | v1.6+dfsg-3 | Debian Med Packaging Team | ||
h | h | phppgadmin | F | R | web-based administration tool for PostgreSQL | v7.13.0+dfsg-2 | Debian PostgreSQL Maintainers | ||
h | h | phybin | F | R | binning/clustering newick trees by topology | v0.3-5 | Debian Med Packaging Team | ||
h | h | phylonium | F | R | Fast and Accurate Estimation of Evolutionary Distances | v1.6-1 | Debian Med Packaging Team | ||
h | h | phyml | F | R | Phylogenetic estimation using Maximum Likelihood | v3:3.3.20211021-1 | Debian Med Packaging Team | ||
h | h | physamp | F | R | sample sequence alignment corresponding to phylogeny | v1.1.0-3 | Debian Med Packaging Team | ||
h | h | phyutility | F | R | simple analyses or modifications on both phylogenetic trees and data matrices | v2.7.3+dfsg-4 | Debian Med Packaging Team | ||
h | h | picard-tools | F | R | Command line tools to manipulate SAM and BAM files | v2.26.6+dfsg-2 | Debian Med Packaging Team | ||
h | h | picosat | F | R | SAT solver with proof and core support | v965-2 | Debian Science Maintainers | ||
h | h | pigx-rnaseq | F | R | pipeline for checkpointed and distributed RNA-seq analyses | v0.0.19-2 | Debian Med Packaging Team | ||
h | h | pilercr | F | R | software for finding CRISPR repeats | v1.06+dfsg-5 | Debian Med Packaging Team | ||
h | h | pilon | F | R | automated genome assembly improvement and variant detection tool | v1.24-1 | Debian Med Packaging Team | ||
h | h | pinfish | F | R | Collection of tools to annotate genomes using long read transcriptomics data | v0.1.0+ds-3 | Debian Med Packaging Team | ||
h | h | pique | F | R | software pipeline for performing genome wide association studies | v1.0-3 | Debian Med Packaging Team | ||
h | h | pirs | F | R | Profile based Illumina pair-end Reads Simulator | v2.0.2+dfsg-10 | Debian Med Packaging Team | ||
h | h | pizzly | F | R | Identifies gene fusions in RNA sequencing data | v0.37.3+ds-6 | Debian Med Packaging Team | ||
h | h | placnet | F | R | Plasmid Constellation Network project | v1.04-1 | Debian Med Packaging Team | ||
h | h | plasmidid | F | R | mapping-based, assembly-assisted plasmid identification tool | v1.6.5+dfsg-1 | Debian Med Packaging Team | ||
h | h | plasmidseeker | F | R | identification of known plasmids from whole-genome sequencing reads | v1.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | plast | F | R | Parallel Local Sequence Alignment Search Tool | v2.3.2+dfsg-7 | Debian Med Packaging Team | ||
h | h | plastimatch | F | R | medical image reconstruction and registration | v1.9.3+dfsg.1-2 | Debian Med Packaging Team | ||
h | h | plfit | F | R | fitting power-law distributions to empirical data -- interfaces | v0.9.3+ds-1 | Debian Science Maintainers | ||
h | h | plink | F | R | whole-genome association analysis toolset | v1.07+dfsg-4 | Debian Med Packaging Team | ||
h | h | plink1.9 | F | R | whole-genome association analysis toolset | v1.90~b6.24-210606-1 | Debian Med Packaging Team | ||
h | h | plink2 | F | R | whole-genome association analysis toolset | v2.00~a3-211011+dfsg-1 | Debian Med Packaging Team | ||
h | h | plplot | F | R | v5.15.0+dfsg-24 | Debian Science Maintainers | |||
h | h | pluto-find-orb | F | R | v0.0~git20180227-4 | Debian Astro Team | |||
h | h | pnetcdf | F | R | v1.12.2-1 | Alastair McKinstry | |||
h | h | populations | F | R | population genetic software | v1.2.33+svn0120106+dfsg-6 | Debian Med Packaging Team | ||
h | h | porechop | F | R | adapter trimmer for Oxford Nanopore reads | v0.2.4+dfsg-3 | Debian Med Packaging Team | ||
h | h | postgis | F | R | Geographic objects support for PostgreSQL | v3.2.0+dfsg-1 | Debian GIS Project | ||
h | h | pplacer | F | R | phylogenetic placement and downstream analysis | v1.1~alpha19-6 | Debian Med Packaging Team | ||
h | h | pplpy | F | R | v0.8.7-1 | Debian Science Maintainers | |||
h | h | praat | F | R | program for speech analysis and synthesis | v6.2.04-1 | Debian Med Packaging Team | ||
h | h | prime-phylo | F | R | bayesian estimation of gene trees taking the species tree into account | v1.0.11-10 | Debian Med Packaging Team | ||
h | h | primer3 | F | R | tool to design flanking oligo nucleotides for DNA amplification | v2.5.0-1 | Debian Med Packaging Team | ||
h | h | primesieve | F | R | fast prime number generator C/C++ library | v7.7+ds-1 | Debian Science Maintainers | ||
h | h | probcons | F | R | PROBabilistic CONSistency-based multiple sequence alignment | v1.12-14 | Debian Med Packaging Team | ||
h | h | prodigal | F | R | Microbial (bacterial and archaeal) gene finding program | v1:2.6.3-5 | Debian Med Packaging Team | ||
gone | h | h | profphd | F | R | secondary structure and solvent accessibility predictor | v1.0.42-3 | Debian Med Packaging Team | |
h | h | proftmb | F | R | per-residue prediction of bacterial transmembrane beta barrels | v1.1.12-10 | Debian Med Packaging Team | ||
h | h | proj | F | R | v8.2.1-1 | Debian GIS Project | |||
h | h | prokka | F | R | rapid annotation of prokaryotic genomes | v1.14.6+dfsg-4 | Debian Med Packaging Team | ||
h | h | prooftree | F | R | proof-tree visualization for Proof General | v0.13-2 | Debian OCaml Maintainers | ||
h | h | proteinortho | F | R | Detection of (Co-)orthologs in large-scale protein analysis | v6.0.31+dfsg-3 | Debian Med Packaging Team | ||
h | h | prottest | F | R | selection of best-fit models of protein evolution | v3.4.2+dfsg-7 | Debian Med Packaging Team | ||
h | h | psi4 | F | R | Quantum Chemical Program Suite | v1:1.3.2+dfsg-2 | Debichem Team | ||
h | h | psignifit | F | R | Fitting and testing hypotheses about psychometric functions | v2.5.6-8 | Debian Med Packaging Team | ||
h | h | psychopy | F | R | environment for creating psychology stimuli in Python | v2021.2.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | psychtoolbox-3 | F | R | v3.0.17.12.dfsg1-1.1 | NeuroDebian Team | |||
h | h | pthreadpool | F | R | v0.0~git20201005.fa75e65-2 | Debian Science Maintainers | |||
h | h | ptl | F | R | v2.3.1-1 | Debian Science Maintainers | |||
h | h | purify | F | R | Collection of routines for radio interferometric imaging | v2.0.0-6 | Debian Astro Team | ||
h | h | pybind11 | F | R | v2.8.1-3 | Debian Science Maintainers | |||
h | h | pybind11-json | F | R | Bridge between nlohmann::json and pybind11 (headers) | v0.2.11-1 | Debian Science Maintainers | ||
h | h | pybtex-docutils | F | R | v1.0.1-1 | Debian Science Maintainers | |||
h | h | pycoqc | F | R | computes metrics and generates Interactive QC plots | v2.5.2+dfsg-3 | Debian Med Packaging Team | ||
h | h | pydicom | F | R | v2.2.2-1 | Debian Med Packaging Team | |||
h | h | pyfai | F | R | Fast Azimuthal Integration scripts | v0.20.0+dfsg1-4.1 | Debian Science Maintainers | ||
h | h | pyferret | F | R | Python3 wrapper for the Ferret visualization and analysis environment, | v7.6.5-1 | Alastair McKinstry | ||
h | h | pyfr | F | R | flux reconstruction in Python | v1.5.0-3 | Debian Science Maintainers | ||
h | h | pygalmesh | F | R | v0.10.5-2 | Debian Science Maintainers | |||
h | h | pygmsh | F | R | v7.1.12-1 | Debian Science Maintainers | |||
h | h | pygrib | F | R | v2.1-4-1 | Alastair McKinstry | |||
contrib | h | h | pyhst2 | F | R | Python High Speed Tomographic reconstruction | v2020c-5 | Debian PaN Maintainers | |
h | h | pymca | F | R | Applications and toolkit for X-ray fluorescence analysis -- scripts | v5.6.7+dfsg-2 | Debian PaN Maintainers | ||
h | h | pymoc | F | R | v0.5.0-5 | Debian Astro Team | |||
h | h | pymol | F | R | Molecular Graphics System | v2.5.0+dfsg-1 | Debichem Team | ||
h | h | pynac | F | R | v0.7.29-2 | Debian Science Maintainers | |||
h | h | pynfft | F | R | v1.3.2-5 | Debian Science Maintainers | |||
h | h | pyode | F | R | v1.2.0.dev15-4 | Debian Med Packaging Team | |||
h | h | pysph | F | R | v1.0~b0~20191115.gite3d5e10-5 | Debian Science Maintainers | |||
h | h | pysurfer | F | R | visualize Freesurfer's data in Python3 | v0.11.0-2 | Debian Med Packaging Team | ||
h | h | pyswarms | F | R | v1.3.0-2 | Debian Science Maintainers | |||
h | h | pysynphot | F | R | v2.0.0+dfsg-1 | Debian Astro Team | |||
h | h | pytables | F | R | v3.7.0-2 | Debian Science Maintainers | |||
h | h | pytango | F | R | v9.3.3-1 | Debian Science Maintainers | |||
h | h | python-agate | F | R | v1.6.3-1 | Debian Python Team | |||
h | h | python-agate-dbf | F | R | v0.2.2-1 | Debian Python Team | |||
h | h | python-agate-excel | F | R | v0.2.5-2 | Debian Python Team | |||
h | h | python-agate-sql | F | R | v0.5.8-1 | Debian Python Team | |||
h | h | python-alignlib | F | R | edit and Hamming distances for biological sequences | v0.1.1+dfsg-2 | Debian Med Packaging Team | ||
h | h | python-asdf | F | R | v2.8.3-1 | Debian Astro Team | |||
h | h | python-ase | F | R | v3.22.1-1 | Debichem Team | |||
h | h | python-asteval | F | R | minimalistic evaluator of Python 3 expression using ast module | v0.9.25-2 | Debian Science Maintainers | ||
gone | h | h | python-backports.tempfile | F | R | backports of new features in Python 2 tempfile module | v1.0-3 | Debian Science Maintainers | |
gone | h | h | python-backports.weakref | F | R | backports of new features in Python 2 weakref module | v1.0-2 | Debian Science Maintainers | |
h | h | python-bayespy | F | R | variational Bayesian inference tools for Python | v0.5.22-1 | Debian QA Group | ||
h | h | python-bumps | F | R | v0.8.1-1 | Debian Science Maintainers | |||
h | h | python-cartopy | F | R | v0.20.1+dfsg-2 | Debian GIS Project | |||
h | h | python-cdo | F | R | Python3 module for Climate Data Operators | v1.5.5-1 | Alastair McKinstry | ||
h | h | python-cutadapt | F | R | v3.5-1 | Debian Med Packaging Team | |||
h | h | python-deeptools | F | R | platform for exploring biological deep-sequencing data | v3.5.1-1 | Debian Med Packaging Team | ||
h | h | python-dmsh | F | R | High-quality 2D mesh generator based on distmesh | v0.2.11-3 | Debian Science Maintainers | ||
h | h | python-drizzle | F | R | v1.13.3-1 | Debian Astro Team | |||
h | h | python-escript | F | R | v5.6-4 | Debian Science Maintainers | |||
h | h | python-fabio | F | R | v0.12.0+dfsg-2 | Debian Science Maintainers | |||
h | h | python-fluids | F | R | v0.1.78-3 | Debian Science Maintainers | |||
h | h | python-geneimpacts | F | R | wraps command line tools to assess variants in gene sequences | v0.3.7-4 | Debian Med Packaging Team | ||
h | h | python-gimmik | F | R | generator of matrix multiplication kernels (Python 3) | v2.1-1.1 | Debian Science Maintainers | ||
h | h | python-gnuplotlib | F | R | Gnuplot-based plotter for numpy | v0.38-1 | Debian Python Team | ||
h | h | python-h5netcdf | F | R | netCDF4 support via h5py for Python 3 | v0.11.0-1 | Debian Science Maintainers | ||
h | h | python-hdf5storage | F | R | v0.1.18-1 | Debian Science Maintainers | |||
h | h | python-hdmedians | F | R | high-dimensional medians in Python3 | v0.14.2-4 | Debian Python Team | ||
h | h | python-leather | F | R | v0.3.4-1 | Debian Python Team | |||
h | h | python-louvain | F | R | community graph analysis implementing Louvain method | v0.0+20181013git3fc1f575-2 | Steffen Moeller | ||
h | h | python-ltfatpy | F | R | Large Time-Frequency Toolbox (LTFAT) in Python | v1.0.16-6 | Debian Science Maintainers | ||
h | h | python-mapnik | F | R | Python 3 interface to the mapnik library | v1:0.0~20200224-7da019cf9-3 | Debian GIS Project | ||
h | h | python-matplotlib-venn | F | R | Python 3 plotting area-proportional two- and three-way Venn diagrams | v0.11.6-2 | Debian Med Packaging Team | ||
h | h | python-meshio | F | R | v5.0.3-2 | Debian Science Maintainers | |||
h | h | python-meshplex | F | R | v0.15.13-1 | Debian Science Maintainers | |||
h | h | python-msgpack-numpy | F | R | serialize numpy arrays using msgpack | v0.4.4-1.1 | Debian Science Maintainers | ||
h | h | python-pairix | F | R | v0.3.7-5 | Debian Med Packaging Team | |||
h | h | python-periodictable | F | R | v1.6.0-1 | Debian Science Maintainers | |||
h | h | python-pomegranate | F | R | v0.13.5-2 | Debian Python Team | |||
h | h | python-pulp | F | R | LP modeler - Python 3.x | v2.5.1+dfsg-2 | Debian Science Maintainers | ||
h | h | python-pyclustering | F | R | Data mining algorithms (Python 3) | v0.10.1.2-2 | Debian Science Maintainers | ||
h | h | python-pygraphviz | F | R | v1.7-3 | Sandro Tosi | |||
h | h | python-pymeasure | F | R | v0.9.0-1 | Debian Science Maintainers | |||
h | h | python-pymzml | F | R | v2.4.7-3 | Debichem Team | |||
gone | h | h | python-pypathlib | F | R | Python tools for 2D open and closed paths | v0.1.3-1 | Debian Science Maintainers | |
h | h | python-pyqtgraph | F | R | v0.12.3-1 | Debian Science Maintainers | |||
h | h | python-quantities | F | R | Library for computation of physical quantities with units, based on numpy | v0.12.4-2 | Debian Science Maintainers | ||
h | h | python-qwt | F | R | v0.9.0-2 | Debian Science Maintainers | |||
contrib | h | h | python-seqcluster | F | R | v1.2.8+ds-1 | Debian Med Packaging Team | ||
h | h | python-sparse | F | R | multidimensional sparse arrays for Python | v0.12.0-1 | Debian Python Team | ||
h | h | python-spectral | F | R | process hyperspectral imagery | v0.22.1-2 | Debian Science Maintainers | ||
h | h | python-streamz | F | R | build pipelines to manage continuous streams of data | v0.6.3-1 | Debian Med Packaging Team | ||
h | h | python-vispy | F | R | v0.6.6-2 | Debian Science Maintainers | |||
h | h | python-xarray | F | R | v0.20.2-1 | Debian Science Maintainers | |||
h | h | pytorch | F | R | v1.8.1-2 | Debian Science Maintainers | |||
h | h | pytorch-audio | F | R | v0.7.2-1 | Debian Science Maintainers | |||
h | h | pytorch-ignite | F | R | High-level library to help with training and evaluating in PyTorch | v0.4.3-1 | Debian Science Maintainers | ||
h | h | pytorch-text | F | R | v0.8.1-1 | Debian Science Maintainers | |||
h | h | pytorch-vision | F | R | v0.8.2-1 | Debian Science Maintainers | |||
h | h | pyvisa | F | R | Python 3 bindings for Virtual Instrument Software Architecture | v1.11.3-2 | Debian Python Team | ||
h | h | pyzo | F | R | interactive editor for scientific Python | v4.11.2-1 | Debian Science Maintainers | ||
h | h | pyzoltan | F | R | Wrapper for the Zoltan data management library | v1.0.1-4 | Debian Science Maintainers | ||
h | h | q2cli | F | R | Click-based command line interface for QIIME 2 | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-cutadapt | F | R | QIIME 2 plugin to work with adapters in sequence data | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-dada2 | F | R | QIIME 2 plugin to work with adapters in sequence data | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-demux | F | R | QIIME 2 plugin for demultiplexing of sequence reads | v2021.8.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | q2-feature-classifier | F | R | QIIME 2 plugin supporting taxonomic classification | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-feature-table | F | R | QIIME 2 plugin supporting operations on feature tables | v2021.8.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | q2-metadata | F | R | QIIME 2 plugin for working with and visualizing Metadata | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-quality-filter | F | R | QIIME2 plugin for PHRED-based filtering and trimming | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2-sample-classifier | F | R | QIIME 2 plugin for machine learning prediction of sample data | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | q2templates | F | R | Design template package for QIIME 2 Plugins | v2021.8.0+ds-1 | Debian Med Packaging Team | ||
h | h | q2-types | F | R | QIIME 2 plugin defining types for microbiome analysis | v2021.8.0-1 | Debian Med Packaging Team | ||
h | h | qcat | F | R | demultiplexing Oxford Nanopore reads from FASTQ files | v1.1.0-3 | Debian Med Packaging Team | ||
h | h | qcumber | F | R | quality control of genomic sequences | v2.3.0-2 | Debian Med Packaging Team | ||
h | h | qcustomplot | F | R | v2.0.1+dfsg1-5 | Debian Science Maintainers | |||
h | h | qd | F | R | v2.3.22+dfsg.1-3 | Debian Science Maintainers | |||
h | h | qelectrotech | F | R | Electric schematic editor | v1:0.8.0-3 | Debian Science Maintainers | ||
h | h | qemu-web-desktop | F | R | Remote desktop service with virtual machines in a browser. | v21.11.30+ds1-1 | Debian Science Maintainers | ||
h | h | qepcad | F | R | quantifier elimination tool | v1.74+ds-3 | Debian Science Maintainers | ||
h | h | qgis | F | R | Geographic Information System (GIS) | v3.16.15+dfsg-1 | Debian GIS Project | ||
h | h | qhull | F | R | v2020.2-4 | Debian Science Maintainers | |||
h | h | qiime | F | R | Quantitative Insights Into Microbial Ecology | v2021.8.0-2 | Debian Med Packaging Team | ||
h | h | qiskit-aer | F | R | Quantum Information Science Kit (Qiskit): Aer | v0.4.1-2 | Debian Science Maintainers | ||
h | h | qiskit-ibmq-provider | F | R | Quantum Information Science Kit (Qiskit): IBM Q Provider | v0.4.6-3 | Debian Science Maintainers | ||
h | h | qmapshack | F | R | GPS mapping (GeoTiff and vector) and GPSr management | v1.16.1-1 | Debian GIS Project | ||
qmc | F | R | Quine McClusky Simplification Tool | v0.94-4 | Rene Engelhard | ||||
gone | qnnpack | F | R | v0.0~git20190828.7d2a4e9-1 | Debian Science Maintainers | ||||
h | h | qrouter | F | R | Multi-level, over-the-cell maze router | v1.4.71-2 | Debian Science Maintainers | ||
h | h | qthid-fcd-controller | F | R | Funcube Dongle controller | v4.1-6 | Debian Hamradio Maintainers | ||
h | h | quorum | F | R | QUality Optimized Reads of genomic sequences | v1.1.1-6 | Debian Med Packaging Team | ||
h | h | qutemol | F | R | interactive visualization of macromolecules | v0.4.1~cvs20081111-14 | Debichem Team | ||
h | h | qutip | F | R | python package for simulating the dynamics of open quantum systems | v4.6.2-2 | Debian Science Maintainers | ||
h | h | racon | F | R | consensus module for raw de novo DNA assembly of long uncorrected reads | v1.5.0-2 | Debian Med Packaging Team | ||
h | h | radiant | F | R | explore hierarchical metagenomic data with zoomable pie charts | v2.8+dfsg-1 | Debian Med Packaging Team | ||
h | h | ragout | F | R | Reference-Assisted Genome Ordering UTility | v2.3-3 | Debian Med Packaging Team | ||
h | h | rambo-k | F | R | Read Assignment Method Based On K-mers | v1.21+dfsg-4 | Debian Med Packaging Team | ||
h | h | rampler | F | R | module for sampling genomic sequences | v2.0.0-2 | Debian Med Packaging Team | ||
h | h | rapmap | F | R | rapid sensitive and accurate DNA read mapping via quasi-mapping | v0.15.0+dfsg-2 | Debian Med Packaging Team | ||
h | h | raster3d | F | R | tools for generating images of proteins or other molecules | v3.0-7-2 | Debian Med Packaging Team | ||
h | h | ratpoints | F | R | find rational points on hyperelliptic curves | v1:2.1.3-2 | Debian Science Maintainers | ||
h | h | raxml | F | R | Randomized Axelerated Maximum Likelihood of phylogenetic trees | v8.2.12+dfsg-7 | Debian Med Packaging Team | ||
h | h | r-base | F | R | GNU R statistical computation and graphics system | v4.1.2-1 | Dirk Eddelbuettel | ||
h | h | r-cran-afex | F | R | GNU R package for analyzing factorial experiments using ANOVA or mixed models | v1.0-1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-alakazam | F | R | Immunoglobulin Clonal Lineage and Diversity Analysis | v1.2.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-aplpack | F | R | Another Plot PACKage: stem.leaf, bagplot, faces, spin3R and others | v1.3.5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-arm | F | R | Data Analysis Using Regression and Multilevel/Hierarchical Models | v1.12-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-bayesfactor | F | R | GNU R Bayes factors for t-tests, ANOVAs and contingency tables | v0.9.12-4.3+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-bbmle | F | R | GNU R tools for general maximum likelihood estimation | v1.0.24-3 | Debian R Packages Maintainers | ||
h | h | r-cran-blockmodeling | F | R | Generalized and classical blockmodeling of valued networks | v1.0.5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-brglm | F | R | GNU R package for bias reduction in binomial-response GLMs | v0.7.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-caret | F | R | GNU R package for classification and regression training | v6.0-90+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-catools | F | R | GNU R package providing various utility functions | v1.18.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-class | F | R | GNU R package for classification | v7.3-19-2 | Dirk Eddelbuettel | ||
h | h | r-cran-coin | F | R | GNU R package providing conditional inference procedures | v1.4-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-colorspace | F | R | GNU R Color Space Manipulation | v2.0-2+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-corpcor | F | R | GNU R for Estimation of Covariance and Correlation -- corpcor | v1.6.10-1 | Debian R Packages Maintainers | ||
h | h | r-cran-crosstalk | F | R | GNU R inter-widget interactivity for HTML widgets | v1.2.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-deldir | F | R | GNU R Delaunay Triangulation and Dirichlet (Voronoi) Tessellation | v1.0-6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-desolve | F | R | GNU R package providing functions that solve initial value problems | v1.30-1 | Debian R Packages Maintainers | ||
h | h | r-cran-energy | F | R | GNU R package for energy statistics for distribution comparison | v1.7-8-1 | Dirk Eddelbuettel | ||
h | h | r-cran-erm | F | R | GNU R package for 'extended Rasch modelling' | v1.0-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-expm | F | R | GNU R Computation of the matrix exponential and related quantities | v0.999-6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-fastcluster | F | R | Fast hierarchical clustering routines for GNU R | v1.2.3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-fastmatch | F | R | GNU R package for fast match replacement for repeated look-ups | v1.1-3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-fields | F | R | GNU R tools for spatial data | v13.3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-geepack | F | R | Generalized Estimating Equation Package for R | v1.3-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-ggplot2 | F | R | implementation of the Grammar of Graphics | v3.3.5+dfsg-2 | Debian R Packages Maintainers | ||
h | h | r-cran-glmnet | F | R | Lasso and Elastic-Net Regularized Generalized Linear Models | v4.1-3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-gmm | F | R | GNU R generalized method of moments and generalized empirical likelihood | v1.6-6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-gnm | F | R | GNU R package for generalized nonlinear models | v1.1-1-3 | Debian R Packages Maintainers | ||
h | h | r-cran-goftest | F | R | GNU R Classical Goodness-of-Fit Tests for Univariate Distributions | v1.2-3-1 | Debian R Packages Maintainers | ||
gone | r-cran-hdf5 | F | R | GNU R package interfacing the NCSA HDF5 library | v1.6.10-4.1 | Dirk Eddelbuettel | |||
h | h | r-cran-highr | F | R | Syntax Highlighting for R Source Code | v0.9+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-httpuv | F | R | GNU R package of HTTP and WebSocket Server Library | v1.6.4+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-igraph | F | R | GNU R network analysis and visualization | v1.2.10-1 | Debian R Packages Maintainers | ||
h | h | r-cran-irlba | F | R | GNU R fast truncated SVD, PCA and symmetric eigendecomposition | v2.3.5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-isocodes | F | R | GNU R package providing tables for several ISO codes | v2021.02.24-1 | Debian R Packages Maintainers | ||
h | h | r-cran-knitr | F | R | GNU R package for dynamic report generation using Literate Programming | v1.37+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-lavaan | F | R | GNU R package for latent variable analysis -- lavaan | v0.6.9-1 | Debian R Packages Maintainers | ||
h | h | r-cran-lhs | F | R | GNU R Latin Hypercube Samples | v1.1.3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-luminescence | F | R | GNU R comprehensive luminescence dating data analysis | v0.9.16-1 | Debian R Packages Maintainers | ||
h | h | r-cran-magrittr | F | R | GNU R forward-pipe operator | v2.0.1-1 | Debian R Packages Maintainers | ||
h | h | r-cran-maps | F | R | GNU R support for producing geographic maps | v3.4.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-maptools | F | R | GNU R Tools for reading and handling spatial objects | v1:1.1-2+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-mass | F | R | GNU R package of Venables and Ripley's MASS | v7.3-54-2 | Dirk Eddelbuettel | ||
h | h | r-cran-matchit | F | R | GNU R package of nonparametric matching methods | v4.3.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-mcmcpack | F | R | R routines for Markov chain Monte Carlo model estimation | v1.6-0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-mlbench | F | R | GNU R Machine Learning Benchmark Problems | v2.1-3-1 | Debian R Packages Maintainers | ||
h | h | r-cran-mlr | F | R | Machine learning in GNU R | v2.19.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-mnp | F | R | GNU R package for fitting multinomial probit (MNP) models | v3.1-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-msm | F | R | GNU R Multi-state Markov and hidden Markov models in continuous time | v1.6.9-1 | Debian R Packages Maintainers | ||
h | h | r-cran-ncdf4 | F | R | GNU R interface to Unidata netCDF format data files | v1.19-1 | Debian R Packages Maintainers | ||
h | h | r-cran-pbapply | F | R | GNU R package providing progress bars for vectorized R functions | v1.5-0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-plm | F | R | GNU R estimators and tests for panel data econometrics | v2.4-3-2 | Debian R Packages Maintainers | ||
h | h | r-cran-plotrix | F | R | GNU R package providing various plotting functions | v3.8-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-princurve | F | R | fit a principal curve in arbitrary dimension | v2.1.6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-qqman | F | R | R package for visualizing GWAS results using Q-Q and manhattan plots | v0.1.8+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-qtl | F | R | GNU R package for genetic marker linkage analysis | v1.50-1 | Debian R Packages Maintainers | ||
h | h | r-cran-randomfieldsutils | F | R | utilities for the simulation and analysis of random fields | v1.0.11-3 | Debian R Packages Maintainers | ||
h | h | r-cran-raster | F | R | GNU R geographic data analysis and modeling | v3.5-11-1 | Debian R Packages Maintainers | ||
h | h | r-cran-rlist | F | R | GNU R toolbox for non-tabular data manipulation | v0.4.6.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-rms | F | R | GNU R regression modeling strategies by Frank Harrell | v6.2-0-1 | Dirk Eddelbuettel | ||
h | h | r-cran-rnetcdf | F | R | GNU R package that provides an R interface to NetCDF datasets | v2.5-2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-rngtools | F | R | GNU R package for random number generators | v1.5.2-1 | Debian R Packages Maintainers | ||
h | h | r-cran-rsdmx | F | R | GNU R package for the Statistical Data and Metadata Exchange (SDMX) framework | v1:0.6+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-r.utils | F | R | GNU R various programming utilities | v2.11.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-scatterd3 | F | R | D3 JavaScript scatterplot from GNU R | v1.0.0+dfsg-1 | Debian R Packages Maintainers | ||
h | h | r-cran-sem | F | R | GNU R functions for fitting structural equation models -- sem | v3.1.13-1 | Debian R Packages Maintainers | ||
h | h | r-cran-shape | F | R | GNU R functions for plotting graphical shapes, colors | v1.4.6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-shazam | F | R | Immunoglobulin Somatic Hypermutation Analysis | v1.1.0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-sjplot | F | R | GNU R data visualization for statistics in social science | v2.8.10-1 | Debian R Packages Maintainers | ||
h | h | r-cran-sp | F | R | GNU R classes and methods for spatial data | v1:1.4-6-1 | Debian R Packages Maintainers | ||
h | h | r-cran-spam | F | R | GNU R functions for sparse matrix algebra | v2.7-0-2 | Debian R Packages Maintainers | ||
h | h | r-cran-spatstat | F | R | GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests | v2.2-0-1 | Debian R Packages Maintainers | ||
h | h | r-cran-spc | F | R | GNU R Statistical Process Control | v1:0.6.5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-statmod | F | R | GNU R package providing algorithms and functions for statistical modeling | v1.4.36-1 | Debian R Packages Maintainers | ||
h | h | r-cran-vcd | F | R | GNU R Visualizing Categorical Data | v1:1.4-9-1 | Debian R Packages Maintainers | ||
h | h | r-cran-vcdextra | F | R | GNU R package providing extensions and additions to the vcd package | v0.7-5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-vgam | F | R | GNU R package for estimating vector generalized additive models | v1.1-5-1 | Debian R Packages Maintainers | ||
h | h | r-cran-vioplot | F | R | GNU R toolbox for violin plots | v0.3.7-1 | Debian R Packages Maintainers | ||
h | h | r-cran-wdi | F | R | GNU R package for accessing the World Development Indicators | v2.7.4-1 | Debian R Packages Maintainers | ||
h | h | r-cran-xml | F | R | GNU R package for XML parsing and generation | v3.99-0.8-1 | Dirk Eddelbuettel | ||
h | h | r-cran-zelig | F | R | GNU R package providing a unified front-end for estimating statistical models | v5.1.7-1 | Debian R Packages Maintainers | ||
h | h | rdkit | F | R | v202109.2-1 | Debichem Team | |||
h | h | rdp-classifier | F | R | extensible sequence classifier for fungal lsu, bacterial and archaeal 16s | v2.10.2-6 | Debian Med Packaging Team | ||
h | h | readucks | F | R | Nanopore read de-multiplexer (read demux -> readux -> readucks, innit) | v0.0.3-3 | Debian Med Packaging Team | ||
h | h | regina-normal | F | R | mathematical software for low-dimensional topology | v7.0-2 | Ben Burton | ||
h | h | relion | F | R | toolkit for 3D reconstructions in cryo-electron microscopy | v3.1.3-1 | Debian Med Packaging Team | ||
contrib | h | h | relion-cuda | F | R | parallel toolkit for 3D reconstructions in cryo-electron microscopy | v3.1.0-2 | Debian Med Packaging Team | |
h | h | repeatmasker-recon | F | R | finds repeat families from biological sequences | v1.08-7 | Debian Med Packaging Team | ||
h | h | reprozip | F | R | tool for reproducing scientific experiments (packer) | v1.1-2 | Debian Science Maintainers | ||
h | h | resfinder | F | R | identify acquired antimicrobial resistance genes | v4.1.5-2 | Debian Med Packaging Team | ||
h | h | rgl | F | R | GNU R package for three-dimensional visualisation using OpenGL | v0.108.3-1 | Dirk Eddelbuettel | ||
h | h | rgtk2 | F | R | v2.20.36-2 | Dirk Eddelbuettel | |||
h | h | rheolef | F | R | efficient Finite Element environment | v7.1-7 | Debian Science Maintainers | ||
gone | h | h | ricks-amdgpu-utils | F | R | AMD GPU performance adjustment and monitoring | v3.5.0-1 | Debian Science Maintainers | |
h | h | rickslab-gpu-utils | F | R | AMD GPU performance adjustment and monitoring | v3.6.0-2 | Debian Science Maintainers | ||
h | h | rmatrix | F | R | GNU R package of classes for dense and sparse matrices | v1.4-0-1 | Dirk Eddelbuettel | ||
h | h | rmpi | F | R | GNU R package interfacing MPI libraries for distributed computing | v0.6-9.2-1 | Dirk Eddelbuettel | ||
h | h | rmysql | F | R | GNU R package providing a DBI-compliant interface to MySQL | v0.10.23-1 | Dirk Eddelbuettel | ||
h | h | rna-star | F | R | ultrafast universal RNA-seq aligner | v2.7.9a+dfsg-3 | Debian Med Packaging Team | ||
h | h | robot-testing-framework | F | R | Robot Testing Framework (metapackage) | v2.0.1+ds1-2 | Debian Science Maintainers | ||
h | h | rodbc | F | R | GNU R package for ODBC database access | v1.3-19-1 | Dirk Eddelbuettel | ||
h | h | roguenarok | F | R | versatile and scalable algorithm for rogue taxon identification | v1.0.1-2 | Debian Med Packaging Team | ||
h | h | ros-actionlib | F | R | v1.13.2-10 | Debian Science Maintainers | |||
h | h | ros-bloom | F | R | Bloom is a release automation tool from Robot OS (Python 3) | v0.10.7-1 | Debian Science Maintainers | ||
h | h | ros-bond-core | F | R | v1.8.6-9 | Debian Science Maintainers | |||
h | h | ros-catkin | F | R | v0.8.10-6 | Debian Science Maintainers | |||
h | h | ros-catkin-lint | F | R | Check Robot OS catkin packages for common errors | v1.6.15-2 | Debian Science Maintainers | ||
h | h | ros-catkin-pkg | F | R | Low-level build system macros for Robot OS -- Python 3 module | v0.4.24-2 | Debian Science Maintainers | ||
h | h | ros-class-loader | F | R | v0.5.0-5 | Debian Science Maintainers | |||
h | h | ros-cmake-modules | F | R | Robot OS CMake Modules | v0.5.0-2 | Debian Science Maintainers | ||
h | h | ros-collada-urdf | F | R | v1.12.13-6 | Debian Science Maintainers | |||
h | h | ros-common-msgs | F | R | v1.13.1-1 | Debian Science Maintainers | |||
h | h | ros-diagnostics | F | R | v1.10.4+ds1-4 | Debian Science Maintainers | |||
h | h | ros-dynamic-reconfigure | F | R | v1.7.1-11 | Debian Science Maintainers | |||
h | h | ros-genmsg | F | R | Python 3 library for generating Robot OS message and service data | v0.5.16-5 | Debian Science Maintainers | ||
h | h | ros-genpy | F | R | Python 3 Robot OS message and service generators | v0.6.16-1 | Debian Science Maintainers | ||
h | h | ros-geometric-shapes | F | R | v0.7.3-5 | Debian Science Maintainers | |||
h | h | ros-geometry | F | R | v1.13.2-7 | Debian Science Maintainers | |||
h | h | ros-geometry2 | F | R | v0.7.5-9 | Debian Science Maintainers | |||
h | h | ros-image-common | F | R | v1.12.0-9 | Debian Science Maintainers | |||
h | h | ros-image-pipeline | F | R | v1.16.0-1 | Debian Science Maintainers | |||
h | h | ros-interactive-markers | F | R | v1.12.0-8 | Debian Science Maintainers | |||
h | h | ros-kdl-parser | F | R | v1.14.1-6 | Debian Science Maintainers | |||
h | h | ros-laser-geometry | F | R | v1.6.7-2 | Debian Science Maintainers | |||
h | h | ros-nodelet-core | F | R | v1.10.2-1 | Debian Science Maintainers | |||
h | h | ros-opencv-apps | F | R | opencv_apps Robot OS package - apps | v2.0.2-5 | Debian Science Maintainers | ||
h | h | ros-perception-pcl | F | R | v1.7.3-2 | Debian Science Maintainers | |||
h | h | ros-python-qt-binding | F | R | Robot OS Python 3 bindings for QT | v0.4.4-1 | Debian Science Maintainers | ||
h | h | ros-random-numbers | F | R | v0.3.2-5 | Debian Science Maintainers | |||
h | h | ros-resource-retriever | F | R | v1.12.7-1 | Debian Science Maintainers | |||
h | h | ros-robot-state-publisher | F | R | Robot OS robot_state_publisher | v1.15.2-4 | Debian Science Maintainers | ||
h | h | ros-ros | F | R | v1.15.8-3 | Debian Science Maintainers | |||
h | h | ros-ros-comm | F | R | v1.15.13+ds1-6 | Debian Science Maintainers | |||
h | h | ros-rosconsole | F | R | v1.14.3-4 | Debian Science Maintainers | |||
h | h | ros-rosconsole-bridge | F | R | v0.5.4-4 | Debian Science Maintainers | |||
h | h | ros-roscpp-core | F | R | v0.7.2-8 | Debian Science Maintainers | |||
h | h | ros-rosdep | F | R | rosdep package manager abstraction tool for Robot OS (Python 3) | v0.21.0-1 | Debian Science Maintainers | ||
h | h | ros-rosinstall | F | R | Installer for Robot OS (Python 3) | v0.7.8-5 | Debian Science Maintainers | ||
h | h | ros-rospack | F | R | v2.6.2-7 | Debian Science Maintainers | |||
h | h | ros-rospkg | F | R | Robot OS package library (Python 3) | v1.3.0-1 | Debian Science Maintainers | ||
h | h | ros-rviz | F | R | v1.14.13+dfsg-1 | Debian Science Maintainers | |||
h | h | ros-urdf | F | R | v1.13.2-7 | Debian Science Maintainers | |||
h | h | ros-vcstools | F | R | VCS/SCM Python source control library for svn, git, hg, and bzr (Python 3) | v0.1.42-4 | Debian Science Maintainers | ||
h | h | ros-vision-opencv | F | R | v1.16.0+ds-1 | Debian Science Maintainers | |||
h | h | ros-wstool | F | R | Commands to manage multi-VCS repositories (for Robot OS) Python 3 | v0.1.18-3 | Debian Science Maintainers | ||
h | h | routine-update | F | R | routine updater for a Debian source package | v0.0.10 | Debian Med Packaging Team | ||
h | h | rquantlib | F | R | GNU R package interfacing the QuantLib finance library | v0.4.14-1 | Dirk Eddelbuettel | ||
h | h | rsem | F | R | RNA-Seq by Expectation-Maximization | v1.3.3+dfsg-2 | Debian Med Packaging Team | ||
h | h | rserve | F | R | GNU R Rserve tcp/ip server and sample clients | v1.8-10-1 | Dirk Eddelbuettel | ||
h | h | rtax | F | R | Classification of sequence reads of 16S ribosomal RNA gene | v0.984-8 | Debian Med Packaging Team | ||
rt-tests | F | R | Test programs for rt kernels | v2.2-1 | Uwe Kleine-König | ||||
h | h | r-zoo | F | R | GNU R package for totally ordered indexed observations | v1.8-9-1 | Dirk Eddelbuettel | ||
h | h | sac2mseed | F | R | Convert SAC waveform data to MiniSEED | v1.13+ds1-1 | Debian Science Maintainers | ||
h | h | saclib | F | R | v2.2.8-3 | Debian Math Team | |||
h | h | saga | F | R | System for Automated Geoscientific Analyses | v7.3.0+dfsg-7 | Debian GIS Project | ||
h | h | sagemath | F | R | Open Source Mathematical Software | v9.4-2 | Debian Math Team | ||
h | h | sagemath-database-cremona-elliptic-curves | F | R | Databases of elliptic curves over the rationals | v0~20191029-4 | Debian Science Maintainers | ||
h | h | sagemath-database-graphs | F | R | Databases of graphs | v20210214+dfsg-1 | Debian Science Maintainers | ||
h | h | sagetex | F | R | Embed Sage code and plots into LaTeX | v3.5+ds-2 | Debian TeX maintainers | ||
h | h | salmid | F | R | rapid Kmer based Salmonella identifier from sequence data | v0.1.23-4 | Debian Med Packaging Team | ||
h | h | salmon | F | R | wicked-fast transcript quantification from RNA-seq data | v1.6.0+ds1-1 | Debian Med Packaging Team | ||
h | h | sambamba | F | R | tools for working with SAM/BAM data | v0.8.1+dfsg-1 | Debian Med Packaging Team | ||
h | h | samblaster | F | R | marks duplicates, extracts discordant/split reads | v0.1.26-3 | Debian Med Packaging Team | ||
h | h | samclip | F | R | filter SAM file for soft and hard clipped alignments | v0.4.0-3 | Debian Med Packaging Team | ||
h | h | samtools | F | R | processing sequence alignments in SAM, BAM and CRAM formats | v1.13-4 | Debian Med Packaging Team | ||
h | h | sandwich | F | R | GNU R package for model-robust standard error estimates | v3.0-1-2 | Dirk Eddelbuettel | ||
h | h | saods9 | F | R | Image display tool for astronomy | v8.3+repack-1 | Debian Astro Team | ||
h | h | sardana | F | R | v3.0.3-1 | Debian Science Maintainers | |||
h | h | sasmodels | F | R | v1.0.5-1 | Debian Science Maintainers | |||
h | h | sasview | F | R | Small Angle Scattering Analysis suite | v5.0.4-1 | Debian Science Maintainers | ||
h | h | scamp | F | R | Compute astrometric and photometric solutions | v2.10.0-2 | Debian Astro Team | ||
h | h | schroedinger-coordgenlibs | F | R | v3.0.0-2 | Debian Science Maintainers | |||
h | h | scikit-learn | F | R | v1.0.1-1 | Debian Science Maintainers | |||
h | h | scilab | F | R | Scientific software package for numerical computations | v6.1.1+dfsg2-3 | Debian Science Maintainers | ||
h | h | scipy | F | R | v1.7.1-2 | Debian Python Team | |||
h | h | scoary | F | R | pangenome-wide association studies | v1.6.16-3 | Debian Med Packaging Team | ||
h | h | scotch | F | R | programs and libraries for graph, mesh and hypergraph partitioning | v6.1.1-2 | Debian Science Maintainers | ||
h | h | scram | F | R | Probabilistic Risk Analysis Tool | v0.16.2-3 | Debian Science Maintainers | ||
h | h | scrappie | F | R | basecaller for Nanopore sequencer | v1.4.2-8 | Debian Med Packaging Team | ||
h | h | sctk | F | R | speech recognition scoring toolkit | v2.4.10-20151007-1312Z+dfsg2-3.1 | Giulio Paci | ||
h | h | sdformat | F | R | v9.3.0+ds-3 | Debian Science Maintainers | |||
h | h | sdformat9 | F | R | v9.6.1+ds1-2 | Debian Science Maintainers | |||
h | h | sdpb | F | R | Semidefinite program solver | v1.0-4 | Debian Science Maintainers | ||
h | h | seaborn | F | R | statistical visualization library for Python3 | v0.11.2-3 | Debian Science Maintainers | ||
h | h | seer | F | R | genomic sequence element (kmer) enrichment analysis | v1.1.4-6 | Debian Med Packaging Team | ||
h | h | segemehl | F | R | short read mapping with gaps | v0.3.4-5 | Debian Med Packaging Team | ||
h | h | segyio | F | R | v1.8.3-1.1 | Debian Science Maintainers | |||
h | h | sentencepiece | F | R | Unsupervised text tokenizer and detokenizer | v0.1.96-1 | Debian Science Maintainers | ||
h | h | sepp | F | R | phylogeny with ensembles of Hidden Markov Models | v4.5.1+really4.5.1+dfsg-2 | Debian Med Packaging Team | ||
h | h | seqan2 | F | R | v2.4.0+dfsg-14 | Debian Med Packaging Team | |||
h | h | seqkit | F | R | cross-platform and ultrafast toolkit for FASTA/Q file manipulation | v2.0.1+ds-2 | Debian Med Packaging Team | ||
h | h | seqmagick | F | R | imagemagick-like frontend to Biopython SeqIO | v0.8.4-3 | Debian Med Packaging Team | ||
h | h | seqprep | F | R | stripping adaptors and/or merging paired reads of DNA sequences with overlap | v1.3.2-7 | Debian Med Packaging Team | ||
h | h | seqsero | F | R | Salmonella serotyping from genome sequencing data | v1.0.1+dfsg-5 | Debian Med Packaging Team | ||
h | h | seqtools | F | R | v4.44.1+dfsg-7 | Debian Med Packaging Team | |||
h | h | seriation | F | R | finds a suitable linear order for a set of objects | v0.1+git20210125.fc7b8cb-1 | Debian Med Packaging Team | ||
h | h | setzer | F | R | simple yet full-featured LaTeX editor | v0.4.2-1 | Debian Science Maintainers | ||
h | h | sfepy | F | R | v2020.4-2 | Debian Science Maintainers | |||
h | h | sga | F | R | de novo genome assembler that uses string graphs | v0.10.15-7 | Debian Med Packaging Team | ||
h | h | shapeit4 | F | R | fast and accurate method for estimation of haplotypes (phasing) | v4.2.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | shasta | F | R | nanopore whole genome assembly (binaries and scripts) | v0.8.0-1 | Debian Med Packaging Team | ||
h | h | shelxle | F | R | graphical user interface for SHELXL | v1.0.1346-1 | Debichem Team | ||
h | h | shovill | F | R | Assemble bacterial isolate genomes from Illumina paired-end reads | v1.1.0-5 | Debian Med Packaging Team | ||
h | h | siconos | F | R | modeling and simulation of nonsmooth dynamical systems (simulation runner tool) | v4.3.1+dfsg-2 | Debian Science Maintainers | ||
h | h | sight | F | R | v21.0.0-3 | Debian Med Packaging Team | |||
h | h | sigviewer | F | R | GUI viewer for biosignals such as EEG, EMG, and ECG | v0.6.4-2 | Debian Med Packaging Team | ||
h | h | silo-llnl | F | R | v4.11-2 | Alastair McKinstry | |||
h | h | silx | F | R | Toolbox for X-Ray data analysis - Executables | v0.15.2+dfsg-3 | Debian Science Maintainers | ||
h | h | simgrid | F | R | v3.29+dfsg-1 | Martin Quinson | |||
h | h | simka | F | R | comparative metagenomics method dedicated to NGS datasets | v1.5.3-5 | Debian Med Packaging Team | ||
h | h | simrisc | F | R | simulation model for breast cancer risk | v14.05.00-3 | Debian Med Packaging Team | ||
h | h | singular | F | R | Computer Algebra System for Polynomial Computations | v1:4.2.1-p3+ds-1 | Debian Science Maintainers | ||
h | h | siril | F | R | astronomical image processing tool | v0.99.10.1-2 | Debian Astro Team | ||
h | h | siscone | F | R | v3.0.5-1 | Debian Science Maintainers | |||
h | h | skesa | F | R | strategic Kmer extension for scrupulous assemblies | v2.4.0-3 | Debian Med Packaging Team | ||
h | h | skewer | F | R | post-processing of high-throughput DNA sequence reads | v0.2.2-6 | Debian Med Packaging Team | ||
h | h | skimage | F | R | v0.18.3-2 | Debian Science Maintainers | |||
h | h | skorch | F | R | scikit-learn compatible neural network library that wraps PyTorch | v0.9.0-3 | Debian Science Maintainers | ||
h | h | skycat | F | R | Image visualization and access to catalogs and data for astronomy | v3.1.2+starlink1~b+dfsg-6 | Debian Astro Team | ||
h | h | slcfitsio | F | R | read and write FITS files from S-Lang | v0.4.7~pre.17-1 | Rafael Laboissière | ||
h | h | slepc | F | R | v3.15.2+dfsg1-2 | Debian Science Maintainers | |||
h | h | slepc4py | F | R | v3.15.1-2 | Debian Science Maintainers | |||
h | h | slxfig | F | R | produce plots and drawings through Xfig's fig2dev in S-Lang | v0.2.0~.135-1 | Rafael Laboissière | ||
h | h | sm | F | R | GNU R package for kernel smoothing methods | v2.2-5.7-1 | Dirk Eddelbuettel | ||
h | h | smalt | F | R | Sequence Mapping and Alignment Tool | v0.7.6-12 | Debian Med Packaging Team | ||
h | h | smrtanalysis | F | R | software suite for single molecule, real-time sequencing | v0~20210111 | Debian Med Packaging Team | ||
h | h | snakemake | F | R | pythonic workflow management system | v6.10.0+dfsg1-1 | Debian Med Packaging Team | ||
h | h | snap | F | R | location of genes from DNA sequence with hidden markov model | v2013-11-29-11 | Debian Med Packaging Team | ||
h | h | snap-aligner | F | R | Scalable Nucleotide Alignment Program | v1.0.0+dfsg-3 | Debian Med Packaging Team | ||
h | h | snow | F | R | GNU R package for 'simple network of workstations' | v1:0.4.4-2 | Dirk Eddelbuettel | ||
h | h | snowball | F | R | v2.2.0-1 | Stefano Rivera | |||
h | h | snp-sites | F | R | Binary code for the package snp-sites | v2.5.1-2 | Debian Med Packaging Team | ||
h | h | soapaligner | F | R | aligner of short reads of next generation sequencers | v2.20-5 | Debian Med Packaging Team | ||
h | h | soapdenovo2 | F | R | short-read assembly method to build de novo draft assembly | v242+dfsg-2 | Debian Med Packaging Team | ||
h | h | solid | F | R | v5.88.0-1 | Debian Qt/KDE Maintainers | |||
h | h | sollya | F | R | library for safe floating-point code development -- tool | v7.0+ds-5 | Debian Science Maintainers | ||
h | h | solvespace | F | R | Parametric 2d/3d CAD | v3.0.rc2+repack1-3 | Debian Science Maintainers | ||
h | h | spaced | F | R | alignment-free sequence comparison using spaced words | v1.2.0-201605+dfsg-3 | Debian Med Packaging Team | ||
h | h | spaln | F | R | splicing-aware transcript-alignment to genomic DNA | v2.4.1+dfsg-3 | Debian Med Packaging Team | ||
h | h | sparskit | F | R | v2.0.0-4 | Debian Science Maintainers | |||
h | h | spass | F | R | automated theorem prover for first-order logic with equality | v3.9-1.1 | Debian Science Maintainers | ||
h | h | spatialite-tools | F | R | Geospatial extension for SQLite - tools | v5.0.1-1 | Debian GIS Project | ||
h | h | spfft | F | R | v1.0.5-1 | Debian Science Maintainers | |||
h | h | spglib | F | R | v1.16.2-2 | Debian Science Maintainers | |||
h | h | sphinxcontrib-bibtex | F | R | v2.4.1-3 | Debian Science Maintainers | |||
h | h | splash | F | R | Visualisation tool for Smoothed Particle Hydrodynamics simulation | v3.3.3-1 | Debian Astro Team | ||
h | h | spoa | F | R | SIMD partial order alignment tool | v4.0.7+ds-2 | Debian Med Packaging Team | ||
h | h | spread-phy | F | R | analyze and visualize phylogeographic reconstructions | v1.0.7+dfsg-4 | Debian Med Packaging Team | ||
h | h | spyder | F | R | Python IDE for scientists | v4.2.1+dfsg1-3 | Debian Science Maintainers | ||
h | h | spyder-kernels | F | R | Jupyter kernels for the Spyder console - Python 3 | v1.10.2-1 | Debian Science Maintainers | ||
h | h | spyder-line-profiler | F | R | line profiling plugin for the Spyder IDE | v0.2.1-1 | Debian Science Maintainers | ||
h | h | spyder-memory-profiler | F | R | memory profiling plugin for the Spyder IDE | v0.2.1-1 | Debian Science Maintainers | ||
h | h | spyder-reports | F | R | plugin to render scientific reports within the Spyder IDE | v0.1.1-4 | Debian Science Maintainers | ||
h | h | spyder-unittest | F | R | plugin to run tests within the Spyder IDE | v0.4.1-1 | Debian Science Maintainers | ||
h | h | sra-sdk | F | R | utilities for the NCBI Sequence Read Archive | v2.11.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | srst2 | F | R | Short Read Sequence Typing for Bacterial Pathogens | v0.2.0-9 | Debian Med Packaging Team | ||
h | h | ssake | F | R | genomics application for assembling millions of very short DNA sequences | v4.0.1-1 | Debian Med Packaging Team | ||
h | h | sspace | F | R | scaffolding pre-assembled contigs after extension | v2.1.1+dfsg-6 | Debian Med Packaging Team | ||
h | h | stacks | F | R | pipeline for building loci from short-read DNA sequences | v2.60+dfsg-1 | Debian Med Packaging Team | ||
h | h | staden-io-lib | F | R | v1.14.14+dfsg-1 | Debian Med Packaging Team | |||
h | h | starjava-topcat | F | R | v4.8-2 | Debian Astro Team | |||
h | h | starjava-ttools | F | R | v3.4-2 | Debian Astro Team | |||
h | h | starpu | F | R | v1.3.9+dfsg-1 | Samuel Thibault | |||
contrib | h | h | starpu-contrib | F | R | v1.3.9+dfsg-1 | Samuel Thibault | ||
h | h | statsmodels | F | R | v0.13.1+dfsg-2 | Debian Science Maintainers | |||
h | h | stellarium | F | R | real-time photo-realistic sky generator | v0.20.4-3 | Debian Astro Team | ||
h | h | step | F | R | interactive physical simulator for KDE | v4:21.08.0-1 | Debian Qt/KDE Maintainers | ||
h | h | stiff | F | R | convert scientific FITS images to the TIFF format | v2.4.0-6 | Debian Astro Team | ||
h | h | stimfit | F | R | Program for viewing and analyzing electrophysiological data | v0.16.0-1 | Christoph Schmidt-Hieber | ||
h | h | stringtie | F | R | assemble short RNAseq reads to transcripts | v2.1.6+ds-1 | Debian Med Packaging Team | ||
h | h | subread | F | R | toolkit for processing next-gen sequencing data | v2.0.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | suitesparse | F | R | v1:5.10.1+dfsg-4 | Debian Science Maintainers | |||
h | h | suitesparse-graphblas | F | R | v6.0.0+dfsg-3 | Debian Science Maintainers | |||
h | h | sumo | F | R | Simulation of Urban MObility (SUMO) | v1.8.0+dfsg2-5 | Debian Science Maintainers | ||
h | h | sundials | F | R | v5.8.0+dfsg-1 | Debian Science Maintainers | |||
h | h | superlu | F | R | v5.3.0+dfsg1-2 | Debian Science Maintainers | |||
h | h | superlu-dist | F | R | v7.2.0+dfsg1-2 | Debian Science Maintainers | |||
h | h | surf-alggeo | F | R | visualization of real algebraic geometry | v1.0.6+ds-6 | Debian Science Maintainers | ||
h | h | survex | F | R | cave surveying and mapping software | v1.4.1-1 | Olly Betts | ||
h | h | survival | F | R | GNU R package for survival analysis | v3.2-13-1 | Dirk Eddelbuettel | ||
h | h | survivor | F | R | tool set for simulating/evaluating SVs | v1.0.7-3 | Debian Med Packaging Team | ||
h | h | svim | F | R | Structural variant caller for long sequencing reads | v2.0.0-2 | Debian Med Packaging Team | ||
h | h | swarm-cluster | F | R | robust and fast clustering method for amplicon-based studies | v3.1.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | swarp | F | R | Resample and co-add together FITS images | v2.41.5-1 | Debian Astro Team | ||
h | h | swe-standard-data | F | R | standard data for the Swiss Ephemeris | v00004-1.1 | Paul Elliott | ||
h | h | swiglpk | F | R | Plain Python bindings for the GNU Linear Programming Kit (Python 3) | v4.65.1-1 | Debian Science Maintainers | ||
h | h | sympy | F | R | v1.7.1-3 | Debian Science Maintainers | |||
h | h | tachyon | F | R | Parallel/Multiprocessor Standalone Ray Tracer - metapackage | v0.99~b6+dsx-10 | Debian Science Maintainers | ||
h | h | tamuanova | F | R | v0.2-5 | Debian Science Maintainers | |||
h | h | tango | F | R | v9.3.4+dfsg1-1 | Debian Science Maintainers | |||
h | h | tantan | F | R | low complexity and tandem repeat masker for biosequences | v26-1 | Debian Med Packaging Team | ||
h | h | taurus | F | R | v5.0.0-1 | Debian Science Maintainers | |||
h | h | taurus-pyqtgraph | F | R | Taurus extension providing pyqtgraph-based widgets (Python 3) | v0.5.9-1 | Debian Science Maintainers | ||
tcd-utils | F | R | convert Tide Constituent Database (TCD) files | v20061127-2 | Peter S Galbraith | ||||
h | h | teem | F | R | v1.12.0~20160122-4 | Debian Science Maintainers | |||
h | h | tellico | F | R | Collection manager for books, videos, music, etc | v3.4.2-1 | Debian Qt/KDE Maintainers | ||
h | h | tensorpipe | F | R | v0.0~git20210304.369e855-2.1 | Debian Science Maintainers | |||
h | h | texlive-base | F | R | TeX Live: Essential programs and files | v2021.20211217-1 | Debian TeX maintainers | ||
h | h | texlive-extra | F | R | v2021.20211217-1 | Debian TeX maintainers | |||
h | h | texstudio | F | R | LaTeX Editor | v3.0.4+ds-2 | Tom Jampen | ||
tfdocgen | F | R | TiLP framework documentation generator | v1.0-3 | Debian Science Maintainers | ||||
h | h | theano | F | R | v1.0.5+dfsg-4 | Debian Science Maintainers | |||
h | h | theli | F | R | Astronomical image data reduction pipeline | v3.1.1-1 | Debian Astro Team | ||
h | h | therion | F | R | Cave surveying - 2D and 3D drawing software | v6.0.4-1 | Martin Budaj | ||
h | h | theseus | F | R | superimpose macromolecules using maximum likelihood | v3.3.0-10 | Debian Med Packaging Team | ||
h | h | tiddit | F | R | structural variant calling | v2.12.2+dfsg-1 | Debian Med Packaging Team | ||
h | h | tigr-glimmer | F | R | Gene detection in archea and bacteria | v3.02b-6 | Debian Med Packaging Team | ||
h | h | tilem | F | R | GTK+ TI Z80 calculator emulator | v2.0-4 | Debian Science Maintainers | ||
h | h | tilp2 | F | R | Texas Instruments hand-helds <-> PC communication program for X | v1.18-4 | Debian Science Maintainers | ||
h | h | tkrplot | F | R | GNU R embedded Tk plotting device package | v0.0.26-1 | Dirk Eddelbuettel | ||
h | h | tnseq-transit | F | R | statistical calculations of essentiality of genes or genomic regions | v3.2.3-1 | Debian Med Packaging Team | ||
h | h | togl | F | R | v2.0-1.1 | Debian Science Maintainers | |||
h | h | toil | F | R | cross-platform workflow engine | v5.5.0-7 | Debian Med Packaging Team | ||
h | h | tombo | F | R | identification of modified nucleotides from raw nanopore sequencing data | v1.5.1-3 | Debian Med Packaging Team | ||
h | h | topcom | F | R | Triangulations Of Point Configurations and Oriented Matroids | v0.17.8+ds-3 | Debian Math Team | ||
h | h | toppred | F | R | transmembrane topology prediction | v1.10-9 | Debian Med Packaging Team | ||
h | h | tortoize | F | R | Application to calculate ramachandran z-scores | v2.0.1-3 | Debian Med Packaging Team | ||
h | h | toulbar2 | F | R | Exact combinatorial optimization for Graphical Models | v1.1.1+dfsg-1 | Debian Science Maintainers | ||
h | h | tpot | F | R | v0.11.7+dfsg-1 | Debian Science Maintainers | |||
h | h | transcalc | F | R | microwave and RF transmission line calculator | v0.14-7 | Debian QA Group | ||
h | h | transdecoder | F | R | find coding regions within RNA transcript sequences | v5.0.1-5 | Debian Med Packaging Team | ||
h | h | transfuse | F | R | Runs formatted documents through transformations/translation | v0.5.7-1 | Debian Science Maintainers | ||
h | h | transrate-tools | F | R | helper for transrate | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | travis | F | R | trajectory analyzer and visualizer | v210521-1 | Debichem Team | ||
h | h | tree-puzzle | F | R | Reconstruction of phylogenetic trees by maximum likelihood | v5.3~rc16+dfsg-8 | Debian Med Packaging Team | ||
h | h | treeview | F | R | Java re-implementation of Michael Eisen's TreeView | v1.2.0+dfsg-1 | Debian Med Packaging Team | ||
h | h | trf | F | R | locate and display tandem repeats in DNA sequences | v4.09.1-5 | Debian Med Packaging Team | ||
non-free | h | h | triangle | F | R | v1.6-4 | Debian Science Maintainers | ||
h | h | trilinos | F | R | v12.18.1-2 | Debian Science Maintainers | |||
h | h | trim-galore | F | R | automate quality and adapter trimming for DNA sequencing | v0.6.7-1 | Debian Med Packaging Team | ||
h | h | trinculo | F | R | toolkit to carry out genetic association for multi-category phenotypes | v0.96+dfsg-4 | Debian Med Packaging Team | ||
h | h | trinityrnaseq | F | R | RNA-Seq De novo Assembly | v2.13.2+dfsg-3 | Debian Med Packaging Team | ||
non-free | h | h | trnascan-se | F | R | detection of transfer RNA genes in genomic sequence | v2.0.9+ds-1 | Debian Med Packaging Team | |
h | h | tseries | F | R | GNU R package for time-series analysis and comp. finance | v0.10-49-1 | Dirk Eddelbuettel | ||
h | h | tulip | F | R | System dedicated to the visualization of huge data sets as graphs | v5.4.0+dfsg-3 | Debian Science Maintainers | ||
h | h | tunnelx | F | R | Cave Survey drawing software | v20190701-1 | Wookey | ||
h | h | tvc | F | R | genetic variant caller for Ion Torrent sequencing platforms | v5.0.3+git20151221.80e144e+dfsg-4 | Debian Med Packaging Team | ||
h | h | ubertooth | F | R | 2.4 GHz wireless development platform for Bluetooth experimentation | v2018.12.R1-5 | Ruben Undheim | ||
h | h | uc-echo | F | R | error correction algorithm designed for short-reads from NGS | v1.12-16 | Debian Med Packaging Team | ||
h | h | ucx | F | R | v1.12.0-1 | Debian Science Maintainers | |||
h | h | udunits | F | R | v2.2.28-3 | Alastair McKinstry | |||
h | h | ufl | F | R | v2021.1.0-4 | Debian Science Maintainers | |||
non-free | h | h | ugene | F | R | integrated bioinformatics toolkit | v40.1+dfsg-1 | Debian Med Packaging Team | |
h | h | uhd | F | R | v4.1.0.5-1 | A. Maitland Bottoms | |||
h | h | uisp | F | R | Micro In-System Programmer for Atmel's AVR MCUs | v20050207-4.5 | Margarita Manterola | ||
h | h | umap-learn | F | R | Uniform Manifold Approximation and Projection | v0.4.5+dfsg-2 | Debian Med Packaging Team | ||
h | h | umis | F | R | tools for processing UMI RNA-tag data | v1.0.8-1 | Debian Med Packaging Team | ||
gone | h | h | unanimity | F | R | generate and process accurate consensus nucleotide sequences | v3.3.0+dfsg-2.1 | Debian Med Packaging Team | |
h | h | unicycler | F | R | hybrid assembly pipeline for bacterial genomes | v0.4.8+dfsg-2 | Debian Med Packaging Team | ||
units-filter | F | R | Parser for expressions concerning physical values | v4.2-3 | Georges Khaznadar | ||||
h | h | urdfdom | F | R | v3.0.0+ds-5 | Debian Science Maintainers | |||
non-free | h | h | varscan | F | R | variant detection in next-generation sequencing data | v2.4.3+dfsg-4 | Debian Med Packaging Team | |
h | h | vc | F | R | C++ types for explicitly data-parallel programming | v1.4.2-2 | Debian Science Maintainers | ||
h | h | vcfanno | F | R | annotate a VCF with other VCFs/BEDs/tabixed files | v0.3.3+ds-1 | Debian Med Packaging Team | ||
h | h | vcftools | F | R | Collection of tools to work with VCF files | v0.1.16-3 | Debian Med Packaging Team | ||
non-free | h | h | vdjtools | F | R | framework for post-analysis of B/T cell repertoires | v1.2.1+git20190311-6 | Debian Med Packaging Team | |
h | h | vedo | F | R | v2021.0.7-1 | Debian Science Maintainers | |||
h | h | velvetoptimiser | F | R | automatically optimise Velvet do novo assembly parameters | v2.2.6-4 | Debian Med Packaging Team | ||
h | h | verilator | F | R | fast free Verilog simulator | v4.038-1 | Debian Electronics Team | ||
h | h | veusz | F | R | 2D and 3D scientific plotting application with graphical interface | v3.3.1-3 | Debian Science Maintainers | ||
h | h | vg | F | R | tools for working with genome variation graphs | v1.30.0+ds-1 | Debian Med Packaging Team | ||
h | h | viking | F | R | GPS data editor, analyzer and viewer | v1.10-2 | Paul Gevers | ||
h | h | vim-latexsuite | F | R | view, edit and compile LaTeX documents from within Vim | v1:1.10.0-1 | Johann Felix Soden | ||
h | h | virtuoso-opensource | F | R | high-performance database | v7.2.5.1+dfsg1-0.2 | Debian Science Maintainers | ||
h | h | virulencefinder | F | R | identify virulence genes in total or partial sequenced isolates of bacteria | v2.0.4-2 | Debian Med Packaging Team | ||
h | h | visp | F | R | v3.4.0-4 | Debian Science Maintainers | |||
h | h | visp-images | F | R | visual servoing library - dataset reference files | v3.4.0-1 | Debian Science Maintainers | ||
h | h | vitables | F | R | graphical tool to browse and edit PyTables and HDF5 files | v3.0.2-2 | Debian Science Maintainers | ||
h | h | vkfft | F | R | Vulkan/CUDA/HIP/OpenCL Fast Fourier Transform library | v1.2.12+ds1-2 | Debian Science Maintainers | ||
h | h | vlfeat | F | R | v0.9.21+dfsg0-7 | Debian Science Maintainers | |||
h | h | vmatch | F | R | large scale sequence analysis software | v2.3.1+dfsg-7 | Debian Med Packaging Team | ||
h | h | vnlog | F | R | Toolkit to read/write/manipulate whitespace-separated ASCII logs | v1.32-1 | Debian Science Maintainers | ||
h | h | voro++ | F | R | library for the computation of the Voronoi diagram | v0.5+revert-to-0.4.6+dfsg1-1 | Debian Astro Team | ||
h | h | voronota | F | R | Voronoi diagram-based tool to find atom contacts | v1.22.3149-1 | Debian Science Maintainers | ||
h | h | votca-csg | F | R | VOTCA's coarse-graining engine | v2021.2-1 | Debichem Team | ||
h | h | votca-tools | F | R | VOTCA's tools library, helper binaries | v2021.2-1 | Debichem Team | ||
h | h | votca-xtp | F | R | VOTCA's exciton transport engine | v2021.2-1 | Debichem Team | ||
h | h | vsearch | F | R | tool for processing metagenomic sequences | v2.18.0-1 | Debian Med Packaging Team | ||
h | h | vspline | F | R | header-only C++ template library for b-spline processing | v1.0.2-1 | Debian Science Maintainers | ||
h | h | vtk6 | F | R | v6.3.0+dfsg2-8.1 | Debian Science Maintainers | |||
h | h | vtk7 | F | R | Binaries for VTK7 | v7.1.1+dfsg2-10.1 | Debian Science Maintainers | ||
h | h | vtk9 | F | R | Binaries for VTK9 | v9.1.0+really9.0.3+dfsg1-4 | Debian Science Maintainers | ||
h | h | wannier90 | F | R | Maximally Localized Wannier Functions - executables | v3.1.0+ds-6 | Debian Science Maintainers | ||
h | h | wcslib | F | R | v7.7+ds-1 | Debian Astro Team | |||
h | h | weka | F | R | Machine learning algorithms for data mining tasks | v3.6.14-3 | Debian Java Maintainers | ||
h | h | wham-align | F | R | Wisconsin's High-Throughput Alignment Method | v0.1.5-8 | Debian Med Packaging Team | ||
h | h | why3 | F | R | Software verification platform | v1.4.0-3 | Debian OCaml Maintainers | ||
h | h | wordnet | F | R | electronic lexical database of English language | v1:3.0-37 | Debian Science Maintainers | ||
h | h | wsclean | F | R | Fast generic widefield interferometric imager | v3.0-2 | Debian Astro Team | ||
h | h | wtdbg2 | F | R | de novo sequence assembler for long noisy reads | v2.5-8 | Debian Med Packaging Team | ||
h | h | wxmaxima | F | R | GUI for the computer algebra system Maxima | v20.12.1-1 | Gunter Königsmann | ||
h | h | x11iraf | F | R | v2.1+dfsg-1 | Debian Astro Team | |||
non-free | h | h | x13as | F | R | seasonal adjustment software for modeling time series | v1.1-B58-1 | Debian Science Maintainers | |
xbs | F | R | 3-d models and movies of molecules | v0-11 | Matthew Vernon | ||||
h | h | xdffileio | F | R | v0.3-4 | Debian Med Packaging Team | |||
h | h | xdmf | F | R | v3.0+git20190531-10 | Alastair McKinstry | |||
xdrawchem | F | R | Chemical structures and reactions editor | v1:1.11.0-3 | Georges Khaznadar | ||||
h | h | xeus | F | R | v1.0.4-1 | Debian Science Maintainers | |||
h | h | xeus-python | F | R | v0.12.5-1 | Debian Science Maintainers | |||
h | h | xfig | F | R | Facility for Interactive Generation of figures under X11 | v1:3.2.8b-1 | Roland Rosenfeld | ||
h | h | xfoil | F | R | program for the design and analysis of subsonic airfoils | v6.99.dfsg+1-3 | Євгеній Мещеряков | ||
h | h | xlsx2csv | F | R | convert xslx files to csv format | v1:0.7.8-1 | Debian Science Maintainers | ||
h | h | xmakemol | F | R | program for visualizing atomic and molecular systems | v5.16-10 | Debichem Team | ||
h | h | xmds2 | F | R | eXtensible Multi-Dimensional Simulator | v3.1.0+dfsg-3 | Debian Science Maintainers | ||
h | h | xmedcon | F | R | Medical Image (DICOM, ECAT, ...) conversion tool (GUI) | v0.16.3+dfsg-1 | Debian Med Packaging Team | ||
h | h | xnnpack | F | R | v0.0~git20201221.e1ffe15-2 | Debian Science Maintainers | |||
xplot | F | R | simple on-screen x-y column data plotter | v1.19-9 | Peter S Galbraith | ||||
h | h | xraylib | F | R | v4.0.0+dfsg1-1 | Debian Science Maintainers | |||
h | h | xrayutilities | F | R | transitional package | v1.7.1-2.1 | Debian Science Maintainers | ||
h | h | xrstools | F | R | v0.15.0+git20210910+c147919d-2 | Debian Science Maintainers | |||
h | h | xsimd | F | R | v7.6.0-2 | Debian Science Maintainers | |||
h | h | xtensor | F | R | v0.23.10-15 | Debian Science Maintainers | |||
h | h | xtide | F | R | provides tide and current predictions | v2.15.2-1.1 | Peter S Galbraith | ||
xtide-coastline | F | R | coastline data for xtide | v20020202-1.2 | Peter S Galbraith | ||||
h | h | xtide-data | F | R | Harmonics data for xtide | v20191229-1.1 | Peter S Galbraith | ||
non-free | h | h | xtide-data-nonfree | F | R | Harmonics data for xtide (Canada, Netherlands, Germany and UK) | v20100529-1.1 | Peter S Galbraith | |
h | h | xtpcpp | F | R | C++ version of X!TandemPipeline | v0.4.43-1 | Debichem Team | ||
h | h | xygrib | F | R | Weather data visualization, GRIB file viewer | v1.2.6.1-1 | Alastair McKinstry | ||
h | h | xylib | F | R | v1.6-1 | Debian Science Maintainers | |||
h | h | yade | F | R | Platform for discrete element modeling | v2021.11~git~6f71ebd-1 | Debian Science Maintainers | ||
h | h | yaha | F | R | find split-read mappings on single-end queries | v0.1.83-3 | Debian Med Packaging Team | ||
non-free | h | h | yale | F | R | stellar data set from the Yale Bright Star Catalog | v5.0.95-2 | Francisco Manuel Garcia Claramonte | |
h | h | yanagiba | F | R | filter low quality Oxford Nanopore reads basecalled with Albacore | v1.0.0-4 | Debian Med Packaging Team | ||
h | h | yanosim | F | R | read simulator nanopore DRS datasets | v0.1-4 | Debian Med Packaging Team | ||
h | h | ycm-cmake-modules | F | R | Extra CMake Modules for YARP and friends | v0.13.0-2 | Debian Science Maintainers | ||
h | h | yorick-cubeview | F | R | 3D FITS data viewer specialized in spectro-imaging | v2.2-2.1 | Debian Science Maintainers | ||
yorick-yutils | F | R | various utilities for the Yorick language | v1.5.2-1.1 | Debian Science Maintainers | ||||
h | h | yosys | F | R | Framework for Verilog RTL synthesis | v0.9-2 | Debian Science Maintainers | ||
h | h | z3 | F | R | theorem prover from Microsoft Research | v4.8.12-1 | LLVM Packaging Team | ||
h | h | zarr | F | R | chunked, compressed, N-dimensional arrays for Python | v2.10.3+ds-1 | Debian Science Maintainers | ||
h | h | zathura | F | R | document viewer with a minimalistic interface | v0.4.8-2 | Sebastian Ramacher | ||
gone | h | h | zimpl | F | R | mathematical modeling language for optimization problems | v3.3.6-1 | Joachim Reichel | |
h | h | zmat | F | R | v0.9.8+ds-6 | Debian Octave Group |